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The map label for this gene is xylH [H]

Identifier: 209550489

GI number: 209550489

Start: 2967992

End: 2969203

Strand: Reverse

Name: xylH [H]

Synonym: Rleg2_2912

Alternate gene names: 209550489

Gene position: 2969203-2967992 (Counterclockwise)

Preceding gene: 209550490

Following gene: 209550488

Centisome position: 65.43

GC content: 61.3

Gene sequence:

>1212_bases
ATGACGCCGATCAACCAACCCATCGCTGAGCAAGGGCGTGTCGTCTCGATCGGAGACTACGTTCGCGGCAACATCCGGGA
ATACGGCATGTTCATCGCGCTGATCGCGATCATGGTGTTCTTCCAGATTTCGACCGGCGGCGTTCTCTTCAGGCCGCTCA
ATCTGACCAACATCATTCTGCAGAACTCGTTCATCGTCATCATGGCGCTGGGCATGCTGCTGATCATCGTCGCCGGCCAT
ATCGATCTTTCGGTCGGCTCCGTCGTCGGCTTCATCGGCGCCATTGCCGGCGTTATGACGGTGCAATGGCATGTCAACTA
TGTCGTCGCGGCCGTCGTCTGTCTGGCCATGGGCGCGCTTGTCGGCGGCATCCAGGGCTATTTCGTCGCCTATCACAAGA
TTCCGGCCTTCATCGTGACGCTCGCCGGCATGCTGGTCTTCCGCGGCCTGACGCTGTTCGTGATGACGGCTTCGGGAACC
GGCACCAGCATCGGTCCTTTCCCGCCGGAGTTCCAGCTGATCAGCATCGGCTTCCTGCCGAACCTGTTCGATATGGGCGG
CATCAACTCGACCTCGATCATTCTGACCGTGATCGGCGCCGTCACCCTCTTCTATATGGCATGGCGCAAGCGGCTGTCGA
ACGAGAAACATGGCAATGACGTCGAGCCCATGGGTTTCTTCCTTGCCCAGAACATCATTGTCGCGCTCGCCATTCTGGGG
CTCGGCCTCCAGCTGTCGATCTATCGCGGCTTCCCGAACGTGCTGGTGATCATGCTCGCCCTGGTCGCCGCCTACGCCTT
CATCACCCGTCGCACGACCATCGGCCGCCGCATCTACGCCATGGGTGGCAATGAGAAGGCGACCAAGCTTTCCGGTATCA
ACACCGAGCGGCTGACCTTCCTGACCTTCGCCAATATGGGCCTGCTCGCCGGTCTCGCCGGCCTAATCGTTGCGCTGCGC
CTCAACTCGGCGACGGCCAAGGGCGGCTTCGGTCTCGAGCTCGACGTCATCGCCGCCTGCTTCATCGGCGGCGCGTCGGC
CCAGGGCGGCGTCGGCAAGGTGACGGGTGCGGTCATCGGCGCGCTTATCATGGGCATCATGAACAACGGCATGTCGATCC
ACGGCCTCGGCACCGACTCGCAGCAGATGGTCAAGGGCGCGGTGCTTCTCGCTGCCGTGTTCTTCGACGTCTACAACAAG
AACAAGGGCTGA

Upstream 100 bases:

>100_bases
ACGTCATGAATGAAGGGCGTATCGTTGCGGAACTGCCGAAGGGAGAAGCGAGCCAGGAAACCATCATGCGCGCCATCATG
CGCTCAGGAGAGAAGAAACA

Downstream 100 bases:

>100_bases
GCGCTCAAGCGCAGCCCGGGCATTCGCAGTCATATGAATGATCAATTCCGGCTCCTGATGGAGCCGGACAGGCGGAGCTT
TTTCTGAAAGTCTTCGCTGG

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTPINQPIAEQGRVVSIGDYVRGNIREYGMFIALIAIMVFFQISTGGVLFRPLNLTNIILQNSFIVIMALGMLLIIVAGH
IDLSVGSVVGFIGAIAGVMTVQWHVNYVVAAVVCLAMGALVGGIQGYFVAYHKIPAFIVTLAGMLVFRGLTLFVMTASGT
GTSIGPFPPEFQLISIGFLPNLFDMGGINSTSIILTVIGAVTLFYMAWRKRLSNEKHGNDVEPMGFFLAQNIIVALAILG
LGLQLSIYRGFPNVLVIMLALVAAYAFITRRTTIGRRIYAMGGNEKATKLSGINTERLTFLTFANMGLLAGLAGLIVALR
LNSATAKGGFGLELDVIAACFIGGASAQGGVGKVTGAVIGALIMGIMNNGMSIHGLGTDSQQMVKGAVLLAAVFFDVYNK
NKG

Sequences:

>Translated_403_residues
MTPINQPIAEQGRVVSIGDYVRGNIREYGMFIALIAIMVFFQISTGGVLFRPLNLTNIILQNSFIVIMALGMLLIIVAGH
IDLSVGSVVGFIGAIAGVMTVQWHVNYVVAAVVCLAMGALVGGIQGYFVAYHKIPAFIVTLAGMLVFRGLTLFVMTASGT
GTSIGPFPPEFQLISIGFLPNLFDMGGINSTSIILTVIGAVTLFYMAWRKRLSNEKHGNDVEPMGFFLAQNIIVALAILG
LGLQLSIYRGFPNVLVIMLALVAAYAFITRRTTIGRRIYAMGGNEKATKLSGINTERLTFLTFANMGLLAGLAGLIVALR
LNSATAKGGFGLELDVIAACFIGGASAQGGVGKVTGAVIGALIMGIMNNGMSIHGLGTDSQQMVKGAVLLAAVFFDVYNK
NKG
>Mature_402_residues
TPINQPIAEQGRVVSIGDYVRGNIREYGMFIALIAIMVFFQISTGGVLFRPLNLTNIILQNSFIVIMALGMLLIIVAGHI
DLSVGSVVGFIGAIAGVMTVQWHVNYVVAAVVCLAMGALVGGIQGYFVAYHKIPAFIVTLAGMLVFRGLTLFVMTASGTG
TSIGPFPPEFQLISIGFLPNLFDMGGINSTSIILTVIGAVTLFYMAWRKRLSNEKHGNDVEPMGFFLAQNIIVALAILGL
GLQLSIYRGFPNVLVIMLALVAAYAFITRRTTIGRRIYAMGGNEKATKLSGINTERLTFLTFANMGLLAGLAGLIVALRL
NSATAKGGFGLELDVIAACFIGGASAQGGVGKVTGAVIGALIMGIMNNGMSIHGLGTDSQQMVKGAVLLAAVFFDVYNKN
KG

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=379, Percent_Identity=38.5224274406332, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=45.0980392156863, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=150, Percent_Identity=39.3333333333333, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693152, Length=154, Percent_Identity=37.012987012987, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790524, Length=145, Percent_Identity=39.3103448275862, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082395, Length=120, Percent_Identity=36.6666666666667, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788471, Length=127, Percent_Identity=40.1574803149606, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787793, Length=136, Percent_Identity=34.5588235294118, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42553; Mature: 42421

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPINQPIAEQGRVVSIGDYVRGNIREYGMFIALIAIMVFFQISTGGVLFRPLNLTNIIL
CCCCCCCHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH
QNSFIVIMALGMLLIIVAGHIDLSVGSVVGFIGAIAGVMTVQWHVNYVVAAVVCLAMGAL
HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGIQGYFVAYHKIPAFIVTLAGMLVFRGLTLFVMTASGTGTSIGPFPPEFQLISIGFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCC
NLFDMGGINSTSIILTVIGAVTLFYMAWRKRLSNEKHGNDVEPMGFFLAQNIIVALAILG
CHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGLQLSIYRGFPNVLVIMLALVAAYAFITRRTTIGRRIYAMGGNEKATKLSGINTERLTF
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHEEE
LTFANMGLLAGLAGLIVALRLNSATAKGGFGLELDVIAACFIGGASAQGGVGKVTGAVIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
ALIMGIMNNGMSIHGLGTDSQQMVKGAVLLAAVFFDVYNKNKG
HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPINQPIAEQGRVVSIGDYVRGNIREYGMFIALIAIMVFFQISTGGVLFRPLNLTNIIL
CCCCCCHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH
QNSFIVIMALGMLLIIVAGHIDLSVGSVVGFIGAIAGVMTVQWHVNYVVAAVVCLAMGAL
HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGIQGYFVAYHKIPAFIVTLAGMLVFRGLTLFVMTASGTGTSIGPFPPEFQLISIGFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCC
NLFDMGGINSTSIILTVIGAVTLFYMAWRKRLSNEKHGNDVEPMGFFLAQNIIVALAILG
CHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGLQLSIYRGFPNVLVIMLALVAAYAFITRRTTIGRRIYAMGGNEKATKLSGINTERLTF
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHEEE
LTFANMGLLAGLAGLIVALRLNSATAKGGFGLELDVIAACFIGGASAQGGVGKVTGAVIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
ALIMGIMNNGMSIHGLGTDSQQMVKGAVLLAAVFFDVYNKNKG
HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]