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The map label for this gene is 209550436

Identifier: 209550436

GI number: 209550436

Start: 2907232

End: 2908491

Strand: Reverse

Name: 209550436

Synonym: Rleg2_2857

Alternate gene names: NA

Gene position: 2908491-2907232 (Counterclockwise)

Preceding gene: 209550437

Following gene: 209550435

Centisome position: 64.09

GC content: 64.84

Gene sequence:

>1260_bases
ATGACAGACATTGCCTGGATCGACCTTGCTCTTGCCTCGGCCCGGCCGAAGGCGCTCGGCGCGCTGCTGCGCTATTTCCG
CAATCTCGATACCGCGGAAGAGGCGTTTCAGGAGGCATGCCTGAGGGCGATCCGCACTTGGCCGGAAAAAGGGCCGCCAC
GCGATCCGACGGCGTGGCTCATCTTCGTCGGCCGAAACAGCGGGATCGACGCGGTGCGCAAGCGGGCGAAGCTCCAGGCC
CTGCCGGACGAGGATACGATCTCCGATACCGAGGACGCCGAAAGCGATATCGCCGGGCGGCTGGACGATTCCCACTATCG
CGACGATATCCTGCGGCTTCTTTTCATCTGCTGCCATCCCGATCTGCCGGCGACCCAGCAGATCGCGCTGGCGCTGCGCA
TCGTTTCCGGCCTTTCGGTGACGCAGATCGCCCGCGCCTTCCTGGTGTCGGAAAGCGCCATGGAGCAACGCATCACCCGC
GCCAAGGCGCGCGTCGCCAAGGCAGGCGTGCCGTTCGAGACGCCGAGCCCTGAGGAAAGGGCCGAGCGTCTTACGATCGT
CAGCACGATGATCTATCTCGTCTTCAACGAAGGCTACAGCCAGGCCGACCCGAAGCATGAGGCGGCCGCCTTCAGCGACG
AGGCGATCCGGCTGGCACGGCTGATGCTGCACCTCTTTGCGTCCGAACCGGAGTTGATGGGTCTGCTGGCGCTGATGCTT
CTGCAGATCTCGCGCCGGCCGGCGCGCTTCAGCGCCGAAGATGAGATCGTGCTGCTCGAAGATCAGGACCGCTCGCTGTG
GAACCAGCCTTTCATCAACGAGGCCCTGGCGCTGCTCGACAAGGCGCTGCGACACCGCCGGCCCGGCCCGTATCAGCTTC
AGGCGGCGATTGCCGCCATCCATTCCCGGGCAAAGCGCGCGGAAGACACCGACTGGGTGGAAATCGATCTGCTCTATCGC
GCGCTGGAGCGGGTTCAGCCTTCGCCCGTCGTGACGCTTAATCGCGCGGTCGTGGTTTCCAAGCTGCACGGGCCGCAGGA
GGCGCTCGATCTGATCGATCCGCTCGGTGAGAAGCTCGGCGGCTATTTCTACTATCACGGCCTGCGGGGCGGGCTGCTGA
AGCAGCTTGGCTTGACCCGCCAGGCGCGCGAAGCCTTCGACCGCGCGATCGCGCTTGCCCATTCGGCGGCGGAAGCTGCC
CATATCCGCCGACAGATCGACAAGATGCAGGCAGAGGCAGCCCAACCGGTCGCAAAATAA

Upstream 100 bases:

>100_bases
AGGCGGTCGCCTTTTCGAAACAGCTTTCATCGGTCAATCCGGGTTCCACCTCTTACGAAATTCGGCCGTTCTACGTGTTC
AGGCCGGGAGATGCTTCATC

Downstream 100 bases:

>100_bases
TCAAGAGAAAATCGCCGCTTTGTCGGAACGGCGAACTTCGGCACGTCCTTGTAACAACCTGACGGAAACAGGTTTATTCA
AATGGAGAGATGTTGAAATG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTDIAWIDLALASARPKALGALLRYFRNLDTAEEAFQEACLRAIRTWPEKGPPRDPTAWLIFVGRNSGIDAVRKRAKLQA
LPDEDTISDTEDAESDIAGRLDDSHYRDDILRLLFICCHPDLPATQQIALALRIVSGLSVTQIARAFLVSESAMEQRITR
AKARVAKAGVPFETPSPEERAERLTIVSTMIYLVFNEGYSQADPKHEAAAFSDEAIRLARLMLHLFASEPELMGLLALML
LQISRRPARFSAEDEIVLLEDQDRSLWNQPFINEALALLDKALRHRRPGPYQLQAAIAAIHSRAKRAEDTDWVEIDLLYR
ALERVQPSPVVTLNRAVVVSKLHGPQEALDLIDPLGEKLGGYFYYHGLRGGLLKQLGLTRQAREAFDRAIALAHSAAEAA
HIRRQIDKMQAEAAQPVAK

Sequences:

>Translated_419_residues
MTDIAWIDLALASARPKALGALLRYFRNLDTAEEAFQEACLRAIRTWPEKGPPRDPTAWLIFVGRNSGIDAVRKRAKLQA
LPDEDTISDTEDAESDIAGRLDDSHYRDDILRLLFICCHPDLPATQQIALALRIVSGLSVTQIARAFLVSESAMEQRITR
AKARVAKAGVPFETPSPEERAERLTIVSTMIYLVFNEGYSQADPKHEAAAFSDEAIRLARLMLHLFASEPELMGLLALML
LQISRRPARFSAEDEIVLLEDQDRSLWNQPFINEALALLDKALRHRRPGPYQLQAAIAAIHSRAKRAEDTDWVEIDLLYR
ALERVQPSPVVTLNRAVVVSKLHGPQEALDLIDPLGEKLGGYFYYHGLRGGLLKQLGLTRQAREAFDRAIALAHSAAEAA
HIRRQIDKMQAEAAQPVAK
>Mature_418_residues
TDIAWIDLALASARPKALGALLRYFRNLDTAEEAFQEACLRAIRTWPEKGPPRDPTAWLIFVGRNSGIDAVRKRAKLQAL
PDEDTISDTEDAESDIAGRLDDSHYRDDILRLLFICCHPDLPATQQIALALRIVSGLSVTQIARAFLVSESAMEQRITRA
KARVAKAGVPFETPSPEERAERLTIVSTMIYLVFNEGYSQADPKHEAAAFSDEAIRLARLMLHLFASEPELMGLLALMLL
QISRRPARFSAEDEIVLLEDQDRSLWNQPFINEALALLDKALRHRRPGPYQLQAAIAAIHSRAKRAEDTDWVEIDLLYRA
LERVQPSPVVTLNRAVVVSKLHGPQEALDLIDPLGEKLGGYFYYHGLRGGLLKQLGLTRQAREAFDRAIALAHSAAEAAH
IRRQIDKMQAEAAQPVAK

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46784; Mature: 46653

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIAWIDLALASARPKALGALLRYFRNLDTAEEAFQEACLRAIRTWPEKGPPRDPTAWL
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IFVGRNSGIDAVRKRAKLQALPDEDTISDTEDAESDIAGRLDDSHYRDDILRLLFICCHP
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
DLPATQQIALALRIVSGLSVTQIARAFLVSESAMEQRITRAKARVAKAGVPFETPSPEER
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLTIVSTMIYLVFNEGYSQADPKHEAAAFSDEAIRLARLMLHLFASEPELMGLLALML
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LQISRRPARFSAEDEIVLLEDQDRSLWNQPFINEALALLDKALRHRRPGPYQLQAAIAAI
HHHHCCCCCCCCCCCEEEEECCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HSRAKRAEDTDWVEIDLLYRALERVQPSPVVTLNRAVVVSKLHGPQEALDLIDPLGEKLG
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHC
GYFYYHGLRGGLLKQLGLTRQAREAFDRAIALAHSAAEAAHIRRQIDKMQAEAAQPVAK
CEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDIAWIDLALASARPKALGALLRYFRNLDTAEEAFQEACLRAIRTWPEKGPPRDPTAWL
CCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IFVGRNSGIDAVRKRAKLQALPDEDTISDTEDAESDIAGRLDDSHYRDDILRLLFICCHP
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
DLPATQQIALALRIVSGLSVTQIARAFLVSESAMEQRITRAKARVAKAGVPFETPSPEER
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLTIVSTMIYLVFNEGYSQADPKHEAAAFSDEAIRLARLMLHLFASEPELMGLLALML
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LQISRRPARFSAEDEIVLLEDQDRSLWNQPFINEALALLDKALRHRRPGPYQLQAAIAAI
HHHHCCCCCCCCCCCEEEEECCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HSRAKRAEDTDWVEIDLLYRALERVQPSPVVTLNRAVVVSKLHGPQEALDLIDPLGEKLG
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHC
GYFYYHGLRGGLLKQLGLTRQAREAFDRAIALAHSAAEAAHIRRQIDKMQAEAAQPVAK
CEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]