Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 209550272

GI number: 209550272

Start: 2730945

End: 2731751

Strand: Reverse

Name: ybfI [H]

Synonym: Rleg2_2692

Alternate gene names: 209550272

Gene position: 2731751-2730945 (Counterclockwise)

Preceding gene: 209550273

Following gene: 209550271

Centisome position: 60.2

GC content: 66.79

Gene sequence:

>807_bases
ATGGCGAAGAACCAGTTCAGGATGCTGCGCTCGGCGCTGGCCGGCGTCGAGGCGGTGGAAGCGGAAACGCATCACAGCTT
TTCCCGGCACACGCATGAGCAGTTCGGCATTGGCCTCGTCTCCTCAGGGGCGCAGAAATCGCTGAGCGGGCGCGGCATGG
TGGAGGCCGAGGCCGGCGATATCATCACGGTCAATCCCAACGAGGTGCATGACGGCGCGCCGGTCGGCGAAGGGCGATCG
TGGCGCATCCTCTATTTCGATCCCGAGATCGTCGCCGGCCTGTCGCGAGAGATCGGCGAGGGTGGGGCAGGCCGGCAGGA
AATCCCCCATCCCGTCATCCGCAACAGGGCGATCGCCGCCCGCTTCGAAACATTGTTTGGCGCGGTGACAGCGAGCGGGT
CGGGATATGGGCTGCTCCGCGAGCAATTGCTGCTGCAGCTTGTGGCCGATGTCATGCGGGAGCGCGGCGGCAGCGACGAG
CGGCCGCCGGTGCCGGCGTCGATCCGCGCGGCCCGGAATCTGATCGACGACGATCCGCTCGCCGCCGTCTCGCTCGCCGA
TCTCGCCGGGCAAAGCGGGCTCAGCCGCTTCCAGGTGCTGCGCGGTTTTGCCAAGGCGACGGGCCTGACGCCGCATGCCT
ATCTCGTCCAGGCCCGCATCCATATCGCACGGCGGCTGATCGCTCAGGGCATGCCGCTTGCTGAAGCGGCCTTCGCCAGC
GGCTTTGCCGATCAGAGCCACATGACGCGGGTCTTCGTGCGCAAATATGGCCTGTCGCCGCGGCTCTATGCCGGTGCCTT
TCTCTAA

Upstream 100 bases:

>100_bases
CAAAGCTCGATTATTTCCAGCTGCTCGACGAATTCTTCTAGCCGTTGCGCCATCTCCCTCCGGCTGGCAGAGTGGCCGCA
ATCGAACCTGCGGACGGACG

Downstream 100 bases:

>100_bases
AGACCCGGCGCCTGCAATTTCGTTCAAGACCGCGAGACGCCCCTGTTGTTTCCTCGGCGTTCCAACAGGAGGCGTTGAAT
GTCGAGGCAGGTTCAAGGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MAKNQFRMLRSALAGVEAVEAETHHSFSRHTHEQFGIGLVSSGAQKSLSGRGMVEAEAGDIITVNPNEVHDGAPVGEGRS
WRILYFDPEIVAGLSREIGEGGAGRQEIPHPVIRNRAIAARFETLFGAVTASGSGYGLLREQLLLQLVADVMRERGGSDE
RPPVPASIRAARNLIDDDPLAAVSLADLAGQSGLSRFQVLRGFAKATGLTPHAYLVQARIHIARRLIAQGMPLAEAAFAS
GFADQSHMTRVFVRKYGLSPRLYAGAFL

Sequences:

>Translated_268_residues
MAKNQFRMLRSALAGVEAVEAETHHSFSRHTHEQFGIGLVSSGAQKSLSGRGMVEAEAGDIITVNPNEVHDGAPVGEGRS
WRILYFDPEIVAGLSREIGEGGAGRQEIPHPVIRNRAIAARFETLFGAVTASGSGYGLLREQLLLQLVADVMRERGGSDE
RPPVPASIRAARNLIDDDPLAAVSLADLAGQSGLSRFQVLRGFAKATGLTPHAYLVQARIHIARRLIAQGMPLAEAAFAS
GFADQSHMTRVFVRKYGLSPRLYAGAFL
>Mature_267_residues
AKNQFRMLRSALAGVEAVEAETHHSFSRHTHEQFGIGLVSSGAQKSLSGRGMVEAEAGDIITVNPNEVHDGAPVGEGRSW
RILYFDPEIVAGLSREIGEGGAGRQEIPHPVIRNRAIAARFETLFGAVTASGSGYGLLREQLLLQLVADVMRERGGSDER
PPVPASIRAARNLIDDDPLAAVSLADLAGQSGLSRFQVLRGFAKATGLTPHAYLVQARIHIARRLIAQGMPLAEAAFASG
FADQSHMTRVFVRKYGLSPRLYAGAFL

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28775; Mature: 28644

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNQFRMLRSALAGVEAVEAETHHSFSRHTHEQFGIGLVSSGAQKSLSGRGMVEAEAGD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCC
IITVNPNEVHDGAPVGEGRSWRILYFDPEIVAGLSREIGEGGAGRQEIPHPVIRNRAIAA
EEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RFETLFGAVTASGSGYGLLREQLLLQLVADVMRERGGSDERPPVPASIRAARNLIDDDPL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCH
AAVSLADLAGQSGLSRFQVLRGFAKATGLTPHAYLVQARIHIARRLIAQGMPLAEAAFAS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GFADQSHMTRVFVRKYGLSPRLYAGAFL
CCCCHHHHHHHHHHHHCCCCCHHCCCCC
>Mature Secondary Structure 
AKNQFRMLRSALAGVEAVEAETHHSFSRHTHEQFGIGLVSSGAQKSLSGRGMVEAEAGD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCC
IITVNPNEVHDGAPVGEGRSWRILYFDPEIVAGLSREIGEGGAGRQEIPHPVIRNRAIAA
EEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RFETLFGAVTASGSGYGLLREQLLLQLVADVMRERGGSDERPPVPASIRAARNLIDDDPL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCH
AAVSLADLAGQSGLSRFQVLRGFAKATGLTPHAYLVQARIHIARRLIAQGMPLAEAAFAS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GFADQSHMTRVFVRKYGLSPRLYAGAFL
CCCCHHHHHHHHHHHHCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]