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The map label for this gene is yddE [C]

Identifier: 209550059

GI number: 209550059

Start: 2508689

End: 2509600

Strand: Reverse

Name: yddE [C]

Synonym: Rleg2_2476

Alternate gene names: 209550059

Gene position: 2509600-2508689 (Counterclockwise)

Preceding gene: 209550060

Following gene: 209550043

Centisome position: 55.3

GC content: 65.24

Gene sequence:

>912_bases
GTGGCGCGAAGCTACAGCGTCTATGACGTGTTCACCGATCGAAAGCTGGCGGGCAACCCGCTGGCGGTGATCTTCGACGG
AGACGATCTCAGCGACGAGGCGATGCAGGCGATCACCCGGGAGATCAATCTCTCCGAGACGGTCTTCGTGCAGCCTTCGA
GCAATCCCGCCTATGCGGCAAAGCTCAGGATCTTCACCCCGGGGCGCGAGCTGCCGTTTGCCGGCCATCCCACAGTCGGC
ACGGTGGTGGCGCTGGCCGAACGGGCGCATGGCGCGGCAACGCTCGATCTCGTGACGGTGCTTGAGGAAAACGTCGGGCC
GGTGCGCTGCGCGGTGCGGCTGAGGGAGGGCGAGGCGAGCTTTGCCGAATTCGACCTGCCGCGGAAATCGCAGCCGGCGG
TGATGCCGCTCGACAAACTGGGCATGGCCGATGCGCTGTCGCTGAAGGTGACCGAGATCGGCTTTGAAAATCACGTGCCC
TCGGTCTGGAGCGCCGGGGTTCCCTTCCTGCTCATTCCGGTGCACGATGTCGGCGCCGCGCAGCGGGTGGAATTCGATCC
GCAGCTCTGGGAAAAGATCGTGCCCTTCGTCGAGGGTGCGCTTGCCTCGGCCTATGTCTATTGCCGCGGCGGCGTCAATC
ACGTGGCGAAGTTCCATGCGCGCATGTTCGCAAGCGGCATGGGGATCGTCGAAGACCCGGCCACCGGTTCGGCGGCGGCG
GCACTCTCCGGCGCGATCCACCATTTCGACCGGCTGACGGACGGGCATCACCCGATCATGATCGAGCAAGGCGTCGAGAT
GGGCCGGCCATCCTTCATCCATCTGCATATCGATGTCGACGGCGGGACGATCTCCAACGCCCGGATCGGCGGCCAGGCAG
TACGGCTGGCGAGCGGCACGCTCGACCTTTGA

Upstream 100 bases:

>100_bases
CGCTCCGGCTTGGCTCCTTGCATCCATCTGACTTAGCGCCTTGCACTCGGCCGTTTGGTCGGGCAGGTTGGCGGCGCGAT
GACGATTCAAGGAGGCCGAT

Downstream 100 bases:

>100_bases
TTTTATGGCGTGCCACGCGTCCGACCGCATGCGTGGCGATTCTATCGCTTTGAATCTGCGTCTAATCCTGTCCGAAAATC
GATCCCAGTTTCCGGGATTA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MARSYSVYDVFTDRKLAGNPLAVIFDGDDLSDEAMQAITREINLSETVFVQPSSNPAYAAKLRIFTPGRELPFAGHPTVG
TVVALAERAHGAATLDLVTVLEENVGPVRCAVRLREGEASFAEFDLPRKSQPAVMPLDKLGMADALSLKVTEIGFENHVP
SVWSAGVPFLLIPVHDVGAAQRVEFDPQLWEKIVPFVEGALASAYVYCRGGVNHVAKFHARMFASGMGIVEDPATGSAAA
ALSGAIHHFDRLTDGHHPIMIEQGVEMGRPSFIHLHIDVDGGTISNARIGGQAVRLASGTLDL

Sequences:

>Translated_303_residues
MARSYSVYDVFTDRKLAGNPLAVIFDGDDLSDEAMQAITREINLSETVFVQPSSNPAYAAKLRIFTPGRELPFAGHPTVG
TVVALAERAHGAATLDLVTVLEENVGPVRCAVRLREGEASFAEFDLPRKSQPAVMPLDKLGMADALSLKVTEIGFENHVP
SVWSAGVPFLLIPVHDVGAAQRVEFDPQLWEKIVPFVEGALASAYVYCRGGVNHVAKFHARMFASGMGIVEDPATGSAAA
ALSGAIHHFDRLTDGHHPIMIEQGVEMGRPSFIHLHIDVDGGTISNARIGGQAVRLASGTLDL
>Mature_302_residues
ARSYSVYDVFTDRKLAGNPLAVIFDGDDLSDEAMQAITREINLSETVFVQPSSNPAYAAKLRIFTPGRELPFAGHPTVGT
VVALAERAHGAATLDLVTVLEENVGPVRCAVRLREGEASFAEFDLPRKSQPAVMPLDKLGMADALSLKVTEIGFENHVPS
VWSAGVPFLLIPVHDVGAAQRVEFDPQLWEKIVPFVEGALASAYVYCRGGVNHVAKFHARMFASGMGIVEDPATGSAAAA
LSGAIHHFDRLTDGHHPIMIEQGVEMGRPSFIHLHIDVDGGTISNARIGGQAVRLASGTLDL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=28.3216783216783, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI74316009, Length=248, Percent_Identity=29.8387096774194, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321818, Length=305, Percent_Identity=30.1639344262295, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32444; Mature: 32313

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSYSVYDVFTDRKLAGNPLAVIFDGDDLSDEAMQAITREINLSETVFVQPSSNPAYAA
CCCCEEEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEE
KLRIFTPGRELPFAGHPTVGTVVALAERAHGAATLDLVTVLEENVGPVRCAVRLREGEAS
EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCC
FAEFDLPRKSQPAVMPLDKLGMADALSLKVTEIGFENHVPSVWSAGVPFLLIPVHDVGAA
HHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCC
QRVEFDPQLWEKIVPFVEGALASAYVYCRGGVNHVAKFHARMFASGMGIVEDPATGSAAA
CEECCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHH
ALSGAIHHFDRLTDGHHPIMIEQGVEMGRPSFIHLHIDVDGGTISNARIGGQAVRLASGT
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEEECCCEECCCEECCEEEEEECCC
LDL
CCC
>Mature Secondary Structure 
ARSYSVYDVFTDRKLAGNPLAVIFDGDDLSDEAMQAITREINLSETVFVQPSSNPAYAA
CCCEEEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEE
KLRIFTPGRELPFAGHPTVGTVVALAERAHGAATLDLVTVLEENVGPVRCAVRLREGEAS
EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCC
FAEFDLPRKSQPAVMPLDKLGMADALSLKVTEIGFENHVPSVWSAGVPFLLIPVHDVGAA
HHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCC
QRVEFDPQLWEKIVPFVEGALASAYVYCRGGVNHVAKFHARMFASGMGIVEDPATGSAAA
CEECCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHH
ALSGAIHHFDRLTDGHHPIMIEQGVEMGRPSFIHLHIDVDGGTISNARIGGQAVRLASGT
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEEECCCEECCCEECCEEEEEECCC
LDL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]