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The map label for this gene is tctD [H]

Identifier: 209549867

GI number: 209549867

Start: 2339690

End: 2340358

Strand: Direct

Name: tctD [H]

Synonym: Rleg2_2283

Alternate gene names: 209549867

Gene position: 2339690-2340358 (Clockwise)

Preceding gene: 209549864

Following gene: 209549868

Centisome position: 51.56

GC content: 65.77

Gene sequence:

>669_bases
ATGCGCGTATTGCTCGTCGAAGATGACGAAGACCTCAGCGGCCGGATCGCCGCCGTGTTGCGATCGGAAAACTTCGTGGT
CGATATCGCTCGCAACGGTGAGGACGCTCTCCATGCAGGCCTGACCGAACTCTTCGATGTCGCGATCCTTGACCTCGGCC
TGCCGAAGATCGATGGCGTCAGCGTGCTGAAGGAGTGGCGCGAGGGCAGCCGCAACCTGCCGGTTCTGGTGCTGACGGCG
CGCGACGGCTGGCCGGACAAGGTCGCAAGCTTCAAGGCCGGCGCCGATGATTTCCTCGCCAAACCCTTCAAGGTGGAAGA
GCTGGTGTTGCGCCTGCGCGCCCTGGTACGCCGGGCGGCCGGCCACGCCGCAGCGCGGCTGACCTGCGGCGCGCTGGTCT
TCGATGCTCAGCTCGGCACCTTCGAACTCGACGGCCTGCCGCTGAAGTTGACGGCGCTGGAATGGCGGGTGCTCTCCTGC
CTGATGCTGCGCAAGGAGATGATCGTCGACCGGCGGGAGCTGACCGAGCGCGTCTATGACGGCGATGCCGAGGTCGACTC
CAATTCCATCGAAGTGATCATCGCCCGGCTGCGCAAGAAACTGGGGGGCGACCGCATCGAGACCGTGCGCGGCCGCGGCT
ATATGCTGACGGCGGCAGCGGCGCCATGA

Upstream 100 bases:

>100_bases
CCTCGCCCGCCTGAACCTCTCCGTTCAGATTGAGTTAAGCTCGGCCCGATAGTTTTGGCCCGTCCCCGGAGATGCCCAGC
CTTGAGGAAAGCCCTGCCCC

Downstream 100 bases:

>100_bases
ATGCTCCGTTGTTCAAGCCGAGATCGATCGCCGGCCGGCTGCTGATGTTCTCGGGCATCTTCGTGACACTGGCGCTCGTT
GTGGCCGCGATCGTGCTCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGVSVLKEWREGSRNLPVLVLTA
RDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAAGHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSC
LMLRKEMIVDRRELTERVYDGDAEVDSNSIEVIIARLRKKLGGDRIETVRGRGYMLTAAAAP

Sequences:

>Translated_222_residues
MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGVSVLKEWREGSRNLPVLVLTA
RDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAAGHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSC
LMLRKEMIVDRRELTERVYDGDAEVDSNSIEVIIARLRKKLGGDRIETVRGRGYMLTAAAAP
>Mature_222_residues
MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGVSVLKEWREGSRNLPVLVLTA
RDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAAGHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSC
LMLRKEMIVDRRELTERVYDGDAEVDSNSIEVIIARLRKKLGGDRIETVRGRGYMLTAAAAP

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=41.2037037037037, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=41.6289592760181, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=37.10407239819, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=33.4841628959276, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=32.2869955156951, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=34.051724137931, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=31.25, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=31.25, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=30.5676855895196, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786911, Length=204, Percent_Identity=31.8627450980392, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=28.8793103448276, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=28.1938325991189, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=27.1929824561404, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=32.2033898305085, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693140, Length=239, Percent_Identity=29.2887029288703, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790437, Length=120, Percent_Identity=30.8333333333333, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24477; Mature: 24477

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV
CEEEEEECCCCCCHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
SVLKEWREGSRNLPVLVLTARDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAA
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
GHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD
CHHHHHHHHHHEEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDAEVDSNSIEVIIARLRKKLGGDRIETVRGRGYMLTAAAAP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCC
>Mature Secondary Structure
MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV
CEEEEEECCCCCCHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
SVLKEWREGSRNLPVLVLTARDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAA
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
GHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD
CHHHHHHHHHHEEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDAEVDSNSIEVIIARLRKKLGGDRIETVRGRGYMLTAAAAP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]