Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 209549780

GI number: 209549780

Start: 2246092

End: 2247006

Strand: Direct

Name: yhjC [C]

Synonym: Rleg2_2190

Alternate gene names: 209549780

Gene position: 2246092-2247006 (Clockwise)

Preceding gene: 209549776

Following gene: 209549785

Centisome position: 49.5

GC content: 65.03

Gene sequence:

>915_bases
ATGCTAGATCTCAACGATATCATGATTTTCGCCCGCGTCATCGAGGCCGGCAGTTTCACCGCCGCGGCGCGCCTGCTCGG
CATGCCGAAGACAACAGTCAGCCGACGCATTGCCGCTCTCGAGCGCGAACTCGGCGTGCGCCTGCTGCAGCGCACGACCC
GCAGCCTCAGCCCGACGGATGCCGGCCGCCTCTATTACGAGGAAAGCAGCCAGGCGCTCCGCGCGATCGAAGGCGCCAAC
CTGCGTCTTGCGGAAGCAAGGACGGAGCCCGCCGGCACGATCCGCATATCGGCGCCGGTCGGCTTCGGTGGTCACTTCCT
GCAGGATGCGATCTTCGATCTTCTGGCGACCTACCCGAAGTCGAGGGTCGAGTTGCGGCTGACCGACGACAGGCTGAATC
TCGTCGAAAACGGCATAGACCTCGCCTTCCGCACCGGCATTCTGGAGGATTCGACGCTGATCGCCCGCAAGCTCGGCTCT
ACCCATCGCTTGCTCTGCGCGAGCCCCGACTATCTCGCCCGCTGCGGCGCGCCCGATCGCCCGGCAGATCTCGTCCGCCA
CGACTGCGTTGTCGCCGGCCAATCCACCCATGCGCAATGGCTGCTTGAAGGCCCACACGGACAGGAAACAGTCTCGGTCT
CAGGGCGCTTCGCCGCCAATGAAATGCAGGCGGTCATGGCCGCAGCGATCGCCGGTTATGGCATCGCCCGACTGCCCCAT
GGGGTCGCCAATACCTGCATCAGGGATGGGCGGCTGTGCCGCGTTCTCGACGGTTACACGACCCCGGTCGGCGGCTTGCA
CGTCGTCTATCCGAGCAGCCGGCACCTGCCGCCTCTGGTCAAGACCTTTATCGAACTCGCCGCCAGACGATTGAACGCGG
GAGCCGACGGCCGCGACGACTTCGCCATCATATAG

Upstream 100 bases:

>100_bases
CTGTCTGCTCCTTGTTGTGAACGATAGAGCAAAGTTAAGGCCTGTCGCATTGAACCATAATAGCTTATAATTGAGAAACA
TCGTACCACCTCGGGATACA

Downstream 100 bases:

>100_bases
CGGTAAGTCCGTCACACATCCGTCAGCAGCACCTTGCCATCGAGGCTTCCGATCAAAGTCGCACTCGCCTGATTGAGGCC
AGCGACTTCCACGGCGCTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDAGRLYYEESSQALRAIEGAN
LRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKSRVELRLTDDRLNLVENGIDLAFRTGILEDSTLIARKLGS
THRLLCASPDYLARCGAPDRPADLVRHDCVVAGQSTHAQWLLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIARLPH
GVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIELAARRLNAGADGRDDFAII

Sequences:

>Translated_304_residues
MLDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDAGRLYYEESSQALRAIEGAN
LRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKSRVELRLTDDRLNLVENGIDLAFRTGILEDSTLIARKLGS
THRLLCASPDYLARCGAPDRPADLVRHDCVVAGQSTHAQWLLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIARLPH
GVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIELAARRLNAGADGRDDFAII
>Mature_304_residues
MLDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDAGRLYYEESSQALRAIEGAN
LRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKSRVELRLTDDRLNLVENGIDLAFRTGILEDSTLIARKLGS
THRLLCASPDYLARCGAPDRPADLVRHDCVVAGQSTHAQWLLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIARLPH
GVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIELAARRLNAGADGRDDFAII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=33.445945945946, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789639, Length=285, Percent_Identity=32.9824561403509, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.2033898305085, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1789440, Length=257, Percent_Identity=32.295719844358, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI87081978, Length=271, Percent_Identity=34.3173431734317, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.757785467128, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=31.4878892733564, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.7716535433071, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=31.6666666666667, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32936; Mature: 32936

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTD
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AGRLYYEESSQALRAIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPK
CCEEEEHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
SRVELRLTDDRLNLVENGIDLAFRTGILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR
CCEEEEEECHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCCC
PADLVRHDCVVAGQSTHAQWLLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIARLPH
HHHHHHHHHEEECCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHCCC
GVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIELAARRLNAGADGRDD
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
FAII
CEEC
>Mature Secondary Structure
MLDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTD
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AGRLYYEESSQALRAIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPK
CCEEEEHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
SRVELRLTDDRLNLVENGIDLAFRTGILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR
CCEEEEEECHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCCC
PADLVRHDCVVAGQSTHAQWLLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIARLPH
HHHHHHHHHEEECCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHCCC
GVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIELAARRLNAGADGRDD
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
FAII
CEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]