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The map label for this gene is dgdR [H]

Identifier: 209549733

GI number: 209549733

Start: 2202148

End: 2203047

Strand: Reverse

Name: dgdR [H]

Synonym: Rleg2_2141

Alternate gene names: 209549733

Gene position: 2203047-2202148 (Counterclockwise)

Preceding gene: 209549735

Following gene: 209549732

Centisome position: 48.55

GC content: 63.56

Gene sequence:

>900_bases
ATGAGCCTTCCCTTTCGCCGTCCCATTCCTTTGCTTGACAACGATGTGCTGCGTACCTTCGTCGCCATCGCCGAGACAGG
CAATTTTTCGACCGCCGCAGAGGCGGTCTTCCGCACGCCCTCGGCAGTGTCGATGCAGATCAAGAAGCTCGAGGAACAGC
TGGGCGCAACACTGTTTTTGCGCGACGCCCGCTCGGTATCGCTGACGCGCCACGGCGAGATGCTGCTGTCTTACGCCCGC
AACATCCTGGCACTGTCGAACGAGGCGGTGTCGCGCTTCATCATGCCGGAGCTCAGCGGTGTCGTCAGGCTCGGCGCGCC
GGAGGATATCGGCGAGCGGTTGCTTCCGAGTATCCTGAAGAGTTTCGCTGAAAGTTATCCGGGCATCATGGTCGATGTGA
CGATCGACATGAGCATCGGGCTGAAAAAGCGCATGGAGGAGCAGCGGCTCGATCTGGCCTTGATCAATTGTGCGACGCGG
CCATTCCCGACAGGTGGCGAGGTGGTGTTCCGCGAGCGGCTGGTCTGGGCCGGCGCCAGGTGCGGTTCGGCGCATCGCCG
CGATCCCCTGCCGATCTCGATCTGGGAGGACGGCTGCATCTGGCGCCAGGAGGCGCTCTCCCAGCTCGAACGCAACAAAC
GGCACTATCGCGTCGCCTATCTCAGCGGCCACACGATGGCGCAGCGCGCCGCCGTACTCTCCGATCTCGCCATTGCGCCG
CTGCCGCTATCCTATGTCAATGAGGACATGGCGATCCTCGGCCCGCAGGAAGGCCTGCCGGAACTCGGCGCTTTCGATAT
CCGCCTGCTGACCGCCTCGCAGGTATCGGGGCCGATCGAGACGGTGGCCGACAGCATTCGCGGCGCCTTTGCCGAGAGAG
CGAAGGCGGTTGCTGCCTGA

Upstream 100 bases:

>100_bases
GTTGCATTAGCCTCCGATACCCGGAATATGAGTGCCGATTGACATTCAATCAAACAAAATGATATGGGGTTATAAATCAG
AAAAATTGAAAGATGCGACG

Downstream 100 bases:

>100_bases
CGATCTCTTTCGTTGAACCTTTTGTCCCCTCGTGCGTTATCGGCGCGAACGGCATAAGTCCCGTTCGGGGTTGATTTCAA
ACAAGGATATTCGAAATGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSLPFRRPIPLLDNDVLRTFVAIAETGNFSTAAEAVFRTPSAVSMQIKKLEEQLGATLFLRDARSVSLTRHGEMLLSYAR
NILALSNEAVSRFIMPELSGVVRLGAPEDIGERLLPSILKSFAESYPGIMVDVTIDMSIGLKKRMEEQRLDLALINCATR
PFPTGGEVVFRERLVWAGARCGSAHRRDPLPISIWEDGCIWRQEALSQLERNKRHYRVAYLSGHTMAQRAAVLSDLAIAP
LPLSYVNEDMAILGPQEGLPELGAFDIRLLTASQVSGPIETVADSIRGAFAERAKAVAA

Sequences:

>Translated_299_residues
MSLPFRRPIPLLDNDVLRTFVAIAETGNFSTAAEAVFRTPSAVSMQIKKLEEQLGATLFLRDARSVSLTRHGEMLLSYAR
NILALSNEAVSRFIMPELSGVVRLGAPEDIGERLLPSILKSFAESYPGIMVDVTIDMSIGLKKRMEEQRLDLALINCATR
PFPTGGEVVFRERLVWAGARCGSAHRRDPLPISIWEDGCIWRQEALSQLERNKRHYRVAYLSGHTMAQRAAVLSDLAIAP
LPLSYVNEDMAILGPQEGLPELGAFDIRLLTASQVSGPIETVADSIRGAFAERAKAVAA
>Mature_298_residues
SLPFRRPIPLLDNDVLRTFVAIAETGNFSTAAEAVFRTPSAVSMQIKKLEEQLGATLFLRDARSVSLTRHGEMLLSYARN
ILALSNEAVSRFIMPELSGVVRLGAPEDIGERLLPSILKSFAESYPGIMVDVTIDMSIGLKKRMEEQRLDLALINCATRP
FPTGGEVVFRERLVWAGARCGSAHRRDPLPISIWEDGCIWRQEALSQLERNKRHYRVAYLSGHTMAQRAAVLSDLAIAPL
PLSYVNEDMAILGPQEGLPELGAFDIRLLTASQVSGPIETVADSIRGAFAERAKAVAA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=34.2412451361868, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1787806, Length=164, Percent_Identity=31.7073170731707, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786713, Length=154, Percent_Identity=33.1168831168831, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI48994962, Length=144, Percent_Identity=31.25, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=156, Percent_Identity=32.0512820512821, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367136, Length=155, Percent_Identity=31.6129032258064, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=117, Percent_Identity=35.042735042735, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=140, Percent_Identity=32.1428571428571, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=119, Percent_Identity=35.2941176470588, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=26.3513513513513, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32871; Mature: 32740

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPFRRPIPLLDNDVLRTFVAIAETGNFSTAAEAVFRTPSAVSMQIKKLEEQLGATLFL
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEE
RDARSVSLTRHGEMLLSYARNILALSNEAVSRFIMPELSGVVRLGAPEDIGERLLPSILK
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHH
SFAESYPGIMVDVTIDMSIGLKKRMEEQRLDLALINCATRPFPTGGEVVFRERLVWAGAR
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEHHCCCCCCCCCHHHHHHHHHHHCCC
CGSAHRRDPLPISIWEDGCIWRQEALSQLERNKRHYRVAYLSGHTMAQRAAVLSDLAIAP
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCC
LPLSYVNEDMAILGPQEGLPELGAFDIRLLTASQVSGPIETVADSIRGAFAERAKAVAA
CCHHHHCCCCEEECCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLPFRRPIPLLDNDVLRTFVAIAETGNFSTAAEAVFRTPSAVSMQIKKLEEQLGATLFL
CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEE
RDARSVSLTRHGEMLLSYARNILALSNEAVSRFIMPELSGVVRLGAPEDIGERLLPSILK
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHH
SFAESYPGIMVDVTIDMSIGLKKRMEEQRLDLALINCATRPFPTGGEVVFRERLVWAGAR
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEHHCCCCCCCCCHHHHHHHHHHHCCC
CGSAHRRDPLPISIWEDGCIWRQEALSQLERNKRHYRVAYLSGHTMAQRAAVLSDLAIAP
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCC
LPLSYVNEDMAILGPQEGLPELGAFDIRLLTASQVSGPIETVADSIRGAFAERAKAVAA
CCHHHHCCCCEEECCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]