Click here to switch to the map view.

The map label for this gene is 209549616

Identifier: 209549616

GI number: 209549616

Start: 2084441

End: 2085631

Strand: Reverse

Name: 209549616

Synonym: Rleg2_2023

Alternate gene names: NA

Gene position: 2085631-2084441 (Counterclockwise)

Preceding gene: 209549617

Following gene: 209549614

Centisome position: 45.96

GC content: 64.06

Gene sequence:

>1191_bases
ATGGCGAAAACGAACGGAAAGAACTGGCTGCGCGCCAAGGGGAGCGCGGCCGGCAGCAAGGTGACCTTTCTCGAACTGTT
CTTCGACCTGGTCTTCGTCTTTTCGATCTCGCAGCTTTCGCATGCGCTTGCCGCCCATTATACACCGCTCGGTGCTGGCG
AAGCGGCGCTGATGACCTTTGCCGTCTGGTGGGTTTGGATTTTCACCGCCTGGGTGACCAACTGGCTCGATCCCGACAAG
ATGCTGGTGCGCGGCATGCTGGTGGCGCTGATGATGCTCGGGCTGCTGCTGTCAGCCTCCATTCCCGAGGCCTTCGGCGA
CAAGGGGCTGCTGTTTGCCGGCGCTTATGTGGCGATGCAGGTCGGGCGCTCGCTGTTTGCCACCTATGCGATGACACGCG
TCGACCGTGCCAATACGCTGAATTTTATTCGCATCACCACCTGGCTCGTGGTGGCCGCCGTCTTCTGGATCGCCGGCGGG
CTGCTCGAGCATGAGGCCCGGCTGATCGCCTGGGTGATCGCGCTGGCGATCGAATATGCCGGCCCGGCCGCGGGCTTTGC
CGTGCCCGGGCTCGGCCGCTCGAAGCCGAGCGACTGGGACGTTTCCGGCGCCCACATGGCCGAGCGCTGCGCGCTCTTCG
TCATCATCTGCCTCGGCGAGGCGATCCTGGTGTCCGGCCGCACCTTTTCGGAGCTGCCGGTTTCGGGGTTGACCGGCATC
GTCTTCGTCACCGGCTTTATCGGCACCGTCGCCATGTGGTGGCTTTATTTCCGTTTTGGCCACGGGCGCGCCGCCCACCG
CATCGAGCATGAGGCGACCCCGGGGGCCTTGGCGCGGCAGGCTTTCACCTATGGGCACATCCCGATCCTTGCCGGCATCA
TCGTCCATGCGGTGGCCGTCGAGTTCATGTTCTCGCATCCGCATGAGATGGGCGATCTCGGCATTGCTACCGCGGTGCTC
GGCGGCTCCGGCCTTTTCCTGATCGGTAATCTCTGGTTCAAGGGTGCGACCAGCGGGCAGCTGCCGCTGTCGCACCTTGC
CGGCCTCGTGTTGCTGATCCTGCTTGCCTTCGCGGCACCCTTCATCGAGATCTATCTGCTGGGCATTCTGGCGACGCTGG
TGCTGATCGTCGTTGCCGCCTGGGAATACCGCTCGCTGAGCGGTACATCGCCGGCGCCGACGCTGCATTGA

Upstream 100 bases:

>100_bases
GTTTTCGGCCTATGAGGACGAACTGAGGGAAAAGGGCATGGACCGCGACACGGCGGAAAAGCCGCGCTGAATTTCACATA
ACCAGCCATCGGGGGGCCAT

Downstream 100 bases:

>100_bases
GATCAATCGTCGTCGTCGCGTAGATCCTTGAGCAGCGTGGTGATGATGCGCTCCATCGAGATGGCGGTCGCCATGCATTG
CTCGATCGGCTCATCGGAGA

Product: low temperature requirement A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAKTNGKNWLRAKGSAAGSKVTFLELFFDLVFVFSISQLSHALAAHYTPLGAGEAALMTFAVWWVWIFTAWVTNWLDPDK
MLVRGMLVALMMLGLLLSASIPEAFGDKGLLFAGAYVAMQVGRSLFATYAMTRVDRANTLNFIRITTWLVVAAVFWIAGG
LLEHEARLIAWVIALAIEYAGPAAGFAVPGLGRSKPSDWDVSGAHMAERCALFVIICLGEAILVSGRTFSELPVSGLTGI
VFVTGFIGTVAMWWLYFRFGHGRAAHRIEHEATPGALARQAFTYGHIPILAGIIVHAVAVEFMFSHPHEMGDLGIATAVL
GGSGLFLIGNLWFKGATSGQLPLSHLAGLVLLILLAFAAPFIEIYLLGILATLVLIVVAAWEYRSLSGTSPAPTLH

Sequences:

>Translated_396_residues
MAKTNGKNWLRAKGSAAGSKVTFLELFFDLVFVFSISQLSHALAAHYTPLGAGEAALMTFAVWWVWIFTAWVTNWLDPDK
MLVRGMLVALMMLGLLLSASIPEAFGDKGLLFAGAYVAMQVGRSLFATYAMTRVDRANTLNFIRITTWLVVAAVFWIAGG
LLEHEARLIAWVIALAIEYAGPAAGFAVPGLGRSKPSDWDVSGAHMAERCALFVIICLGEAILVSGRTFSELPVSGLTGI
VFVTGFIGTVAMWWLYFRFGHGRAAHRIEHEATPGALARQAFTYGHIPILAGIIVHAVAVEFMFSHPHEMGDLGIATAVL
GGSGLFLIGNLWFKGATSGQLPLSHLAGLVLLILLAFAAPFIEIYLLGILATLVLIVVAAWEYRSLSGTSPAPTLH
>Mature_395_residues
AKTNGKNWLRAKGSAAGSKVTFLELFFDLVFVFSISQLSHALAAHYTPLGAGEAALMTFAVWWVWIFTAWVTNWLDPDKM
LVRGMLVALMMLGLLLSASIPEAFGDKGLLFAGAYVAMQVGRSLFATYAMTRVDRANTLNFIRITTWLVVAAVFWIAGGL
LEHEARLIAWVIALAIEYAGPAAGFAVPGLGRSKPSDWDVSGAHMAERCALFVIICLGEAILVSGRTFSELPVSGLTGIV
FVTGFIGTVAMWWLYFRFGHGRAAHRIEHEATPGALARQAFTYGHIPILAGIIVHAVAVEFMFSHPHEMGDLGIATAVLG
GSGLFLIGNLWFKGATSGQLPLSHLAGLVLLILLAFAAPFIEIYLLGILATLVLIVVAAWEYRSLSGTSPAPTLH

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010640 [H]

Pfam domain/function: PF06772 LtrA [H]

EC number: NA

Molecular weight: Translated: 42616; Mature: 42485

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTNGKNWLRAKGSAAGSKVTFLELFFDLVFVFSISQLSHALAAHYTPLGAGEAALMTF
CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVWWVWIFTAWVTNWLDPDKMLVRGMLVALMMLGLLLSASIPEAFGDKGLLFAGAYVAMQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHH
VGRSLFATYAMTRVDRANTLNFIRITTWLVVAAVFWIAGGLLEHEARLIAWVIALAIEYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPAAGFAVPGLGRSKPSDWDVSGAHMAERCALFVIICLGEAILVSGRTFSELPVSGLTGI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCHHHHH
VFVTGFIGTVAMWWLYFRFGHGRAAHRIEHEATPGALARQAFTYGHIPILAGIIVHAVAV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
EFMFSHPHEMGDLGIATAVLGGSGLFLIGNLWFKGATSGQLPLSHLAGLVLLILLAFAAP
HHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIEIYLLGILATLVLIVVAAWEYRSLSGTSPAPTLH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AKTNGKNWLRAKGSAAGSKVTFLELFFDLVFVFSISQLSHALAAHYTPLGAGEAALMTF
CCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVWWVWIFTAWVTNWLDPDKMLVRGMLVALMMLGLLLSASIPEAFGDKGLLFAGAYVAMQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHH
VGRSLFATYAMTRVDRANTLNFIRITTWLVVAAVFWIAGGLLEHEARLIAWVIALAIEYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPAAGFAVPGLGRSKPSDWDVSGAHMAERCALFVIICLGEAILVSGRTFSELPVSGLTGI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCHHHHH
VFVTGFIGTVAMWWLYFRFGHGRAAHRIEHEATPGALARQAFTYGHIPILAGIIVHAVAV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
EFMFSHPHEMGDLGIATAVLGGSGLFLIGNLWFKGATSGQLPLSHLAGLVLLILLAFAAP
HHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIEIYLLGILATLVLIVVAAWEYRSLSGTSPAPTLH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9204561; 11481432 [H]