| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is comEC [H]
Identifier: 209549196
GI number: 209549196
Start: 1623033
End: 1625465
Strand: Direct
Name: comEC [H]
Synonym: Rleg2_1597
Alternate gene names: 209549196
Gene position: 1623033-1625465 (Clockwise)
Preceding gene: 209549194
Following gene: 209549198
Centisome position: 35.77
GC content: 64.61
Gene sequence:
>2433_bases ATGGAGGAATTGACGACAGTCGAATTGCGGCCGGAAGCGGGCGCCGGCCTGGCCGATTCCCAGGGTTTTCCCGCGCCCGC GGTGGTGAATCGGCCGGCAAGGACGCAGTCCGCGACGCCGTTGCGCCACCGGCTGCCGGCCGCGGCCTCGCAATCGCTGC GTGCCGGAATCCGCATGCTGGGCGAGGAGGCCGACCATGGCCGACTGCTGCTGTTCTCGCCGGTCTTTCTCGGCGCCGGG GCGGCCTTCTGGTTTCTCGCGCCATCGGATTTTTCCCTCGTCGCATCGCTGCTCTGCATGTTGACGCCGGCGGCCGTGGT TGTCGTCGCCGGCCCCAGCCGGCCGGTGTTGCGGGCCAGCTTCCTGGCGCTGGCGCTTTTCGCCTGCGGCATGCTCTCGG CACAATTCGAGAGCTGGCGGGCTTCGACCGTGATCCTCGATTCATCCGTGACGACGACGGTGACCGGCCGTGTCGAACGG CGGGAAGGCGATGGACGTGGGCGCTGGCGCTACATCCTTTCCGTCACCGGCACGGAGAAGCCGGAGTTGAAGCGGTGGCC GGGGCGCATCACAGCGATCGTCCGCGGCGCCGATACACCTTTCGAGATCGGTGACATCGTCACCGGCAGGGCGCGGCTGA CGCCGCCGGCCGGCCCAGCGCTGCCCGAGCTCAACGATTTCTCCTTCAGTGCGTATTTCGATGGCATCGGCGCCAACGGC TTCTTCTACGGCGCGCCCGAGAGAGTCGATCTGCAGGCAGGTCCGCAGCCGGCGAGATCGACATCGGAAACTATGCTCGA ATGGCTTTACCAACTGCGCAGCCGCATCGGCGACCGCATTCGGTCGATCCTGCCCGGCGATACCGGCGCTTTTGCCGCTG CACTGGTGACCGACGAGCGGCGCGCCATCTCGAATGCGACGACGGAAGCGCTGCGCCAGTCCGGTCTTGCTCATATTGTT GCGATCTCCGGCCTCAACATGGCGCTGTCGGCCGGCATCTTCTTCGTCGGCTTCCGGATGCTGCTCAGCCTCTTTCCGGG CGTTGCCCAGGCTTATCCGACCAAGAAGATCGCCGCAGCAGGCGCGCTCATCGCCGTCACCGCTTACTACCTGATCTCCG GCTTCGGGGTCTCGGCTGAACGCGCCTTTATCATGATGGCCATCATGCTGATCGCCGTCTTCTTCGATCGGCCGTCGATC AGCCTGCGCAATGTCGTTCTCTCGGCCCTTGTCATCATTGCCATTTCGCCCTCCGAAGTCCTGGGTCCGAGCTTCCAGAT GTCCTTTGCCGCGACATTGGCATTGGTATCGGGTTATCAGCTGTGGAAAGACCGGCGCATCCGCGAAAACGCCTGGCTGA AGTTGCCGGTCTTCCGGCCGGTCGTTGCGGTCGCCGGTTTCTTCGGCGGCGTCTTCCTGACCTCGCTGATCGGCGGCTTC TCCACGGCGCTGTTTTCGATCGAGCATTTTCATCGCCTGACCGCTTACGGCCTGCCGGCAAACCTCGCGACGATGCCGAT CATCTCCTTCATCGTCATGCCGGCCGGGCTGCTGGCGATGTTGCTCATGCCGTTCGGTCTGGACACTCCGCTCTGGAAGG TGGTCGGCTTCGGGCTCGATCTGGTGATCGCAGTCGCCAAGACGGTGTCCGGCTGGGGCGGCGATATCGGCGTCGGCCGC TTGCCCGCCTGGTATTTCGCCGTCGCCGTGGCAGGCTTCCTGCTGCTGACGTTGCTGCGTACCCGGCTTCGCCATGCCGG CACATCGATCCTCGCCGTCTCGACGCTTCTGGTGCTGATTCTGCCGGTTCCGCGGCCGCCGGATCTGGTGATTTCGGAGG ACGGCGGTCTGGTCGCGCTCGTCGAGACCGCGGCAATGGCTTCCAATCGTGAAAACCCGCCGGATTTCATCTTCGACCAG TGGCAAAGAGCGCTGGTCCTGCCGACCCATCACCCGCCGAAGATGCTGGATGGCCCCGCTATCCCACCGGGGGGAGAAGA CCGCCGCGTCAGGCTTTCCCGCGAGCAGCAGAATGAAGCAAGGACAGCAATGCGGGCGGCTGCCGCGGGCGGAGAAACAA ACCGCTTTTCCTGCGTCAAGAAGGCCTGGTGCACATCGAGGCTTGGCAATGGCCGTGTGGTAACCATCATCGACAATGCC GCTTATCTCGGTCCGGCCTGCGATTCGGCCGATATCGTCGTGACGCCGGTCCGTCTGCGTTTCAACAGCTGCCGCTCAGG CGCGACGCTCTTCACCGGTGAGACGCTGCGCAGGACCGGTTCCGTCGAGTTGCGTTTCGCGGATGCCGGCCTGGAGGTCG CAACCGCATTCGAAACGCTGTCGCGGCCGTGGATGCGCCAGCGCGCCTATGACTGGCGCAGCAACAGTTTTACCGAATCC GGCCTGTCCGGTGTCAGTGATAGCGGCGAATGA
Upstream 100 bases:
>100_bases TGGCTGTGGCAATTTTCCCTCATATTTCAATCGATTATTCTTGCTCGTTTTGATTGAAGGTTGCATTCTGACCGCAGGTG CGGGCGATGTTGGGCGGGGC
Downstream 100 bases:
>100_bases GGCCGACGAGTTTGCCCTGCACCTTGACGCGGTCCGGCCCGAAGATCCGGGTCTCGTAAGCCGGGTTGGCCGCTTCAAGT GCGATCGAGGCGCCCTTGCG
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MEELTTVELRPEAGAGLADSQGFPAPAVVNRPARTQSATPLRHRLPAAASQSLRAGIRMLGEEADHGRLLLFSPVFLGAG AAFWFLAPSDFSLVASLLCMLTPAAVVVVAGPSRPVLRASFLALALFACGMLSAQFESWRASTVILDSSVTTTVTGRVER REGDGRGRWRYILSVTGTEKPELKRWPGRITAIVRGADTPFEIGDIVTGRARLTPPAGPALPELNDFSFSAYFDGIGANG FFYGAPERVDLQAGPQPARSTSETMLEWLYQLRSRIGDRIRSILPGDTGAFAAALVTDERRAISNATTEALRQSGLAHIV AISGLNMALSAGIFFVGFRMLLSLFPGVAQAYPTKKIAAAGALIAVTAYYLISGFGVSAERAFIMMAIMLIAVFFDRPSI SLRNVVLSALVIIAISPSEVLGPSFQMSFAATLALVSGYQLWKDRRIRENAWLKLPVFRPVVAVAGFFGGVFLTSLIGGF STALFSIEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDTPLWKVVGFGLDLVIAVAKTVSGWGGDIGVGR LPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLLVLILPVPRPPDLVISEDGGLVALVETAAMASNRENPPDFIFDQ WQRALVLPTHHPPKMLDGPAIPPGGEDRRVRLSREQQNEARTAMRAAAAGGETNRFSCVKKAWCTSRLGNGRVVTIIDNA AYLGPACDSADIVVTPVRLRFNSCRSGATLFTGETLRRTGSVELRFADAGLEVATAFETLSRPWMRQRAYDWRSNSFTES GLSGVSDSGE
Sequences:
>Translated_810_residues MEELTTVELRPEAGAGLADSQGFPAPAVVNRPARTQSATPLRHRLPAAASQSLRAGIRMLGEEADHGRLLLFSPVFLGAG AAFWFLAPSDFSLVASLLCMLTPAAVVVVAGPSRPVLRASFLALALFACGMLSAQFESWRASTVILDSSVTTTVTGRVER REGDGRGRWRYILSVTGTEKPELKRWPGRITAIVRGADTPFEIGDIVTGRARLTPPAGPALPELNDFSFSAYFDGIGANG FFYGAPERVDLQAGPQPARSTSETMLEWLYQLRSRIGDRIRSILPGDTGAFAAALVTDERRAISNATTEALRQSGLAHIV AISGLNMALSAGIFFVGFRMLLSLFPGVAQAYPTKKIAAAGALIAVTAYYLISGFGVSAERAFIMMAIMLIAVFFDRPSI SLRNVVLSALVIIAISPSEVLGPSFQMSFAATLALVSGYQLWKDRRIRENAWLKLPVFRPVVAVAGFFGGVFLTSLIGGF STALFSIEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDTPLWKVVGFGLDLVIAVAKTVSGWGGDIGVGR LPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLLVLILPVPRPPDLVISEDGGLVALVETAAMASNRENPPDFIFDQ WQRALVLPTHHPPKMLDGPAIPPGGEDRRVRLSREQQNEARTAMRAAAAGGETNRFSCVKKAWCTSRLGNGRVVTIIDNA AYLGPACDSADIVVTPVRLRFNSCRSGATLFTGETLRRTGSVELRFADAGLEVATAFETLSRPWMRQRAYDWRSNSFTES GLSGVSDSGE >Mature_810_residues MEELTTVELRPEAGAGLADSQGFPAPAVVNRPARTQSATPLRHRLPAAASQSLRAGIRMLGEEADHGRLLLFSPVFLGAG AAFWFLAPSDFSLVASLLCMLTPAAVVVVAGPSRPVLRASFLALALFACGMLSAQFESWRASTVILDSSVTTTVTGRVER REGDGRGRWRYILSVTGTEKPELKRWPGRITAIVRGADTPFEIGDIVTGRARLTPPAGPALPELNDFSFSAYFDGIGANG FFYGAPERVDLQAGPQPARSTSETMLEWLYQLRSRIGDRIRSILPGDTGAFAAALVTDERRAISNATTEALRQSGLAHIV AISGLNMALSAGIFFVGFRMLLSLFPGVAQAYPTKKIAAAGALIAVTAYYLISGFGVSAERAFIMMAIMLIAVFFDRPSI SLRNVVLSALVIIAISPSEVLGPSFQMSFAATLALVSGYQLWKDRRIRENAWLKLPVFRPVVAVAGFFGGVFLTSLIGGF STALFSIEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDTPLWKVVGFGLDLVIAVAKTVSGWGGDIGVGR LPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLLVLILPVPRPPDLVISEDGGLVALVETAAMASNRENPPDFIFDQ WQRALVLPTHHPPKMLDGPAIPPGGEDRRVRLSREQQNEARTAMRAAAAGGETNRFSCVKKAWCTSRLGNGRVVTIIDNA AYLGPACDSADIVVTPVRLRFNSCRSGATLFTGETLRRTGSVELRFADAGLEVATAFETLSRPWMRQRAYDWRSNSFTES GLSGVSDSGE
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 86987; Mature: 86987
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEELTTVELRPEAGAGLADSQGFPAPAVVNRPARTQSATPLRHRLPAAASQSLRAGIRML CCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHH GEEADHGRLLLFSPVFLGAGAAFWFLAPSDFSLVASLLCMLTPAAVVVVAGPSRPVLRAS CCCCCCCEEEEECHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHH FLALALFACGMLSAQFESWRASTVILDSSVTTTVTGRVERREGDGRGRWRYILSVTGTEK HHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECEEEECCCCCCCEEEEEEEECCCCC PELKRWPGRITAIVRGADTPFEIGDIVTGRARLTPPAGPALPELNDFSFSAYFDGIGANG CCHHHCCCEEEEEEECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEHHCCCCCCCC FFYGAPERVDLQAGPQPARSTSETMLEWLYQLRSRIGDRIRSILPGDTGAFAAALVTDER EECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RAISNATTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLFPGVAQAYPTKKIAAA HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHH GALIAVTAYYLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALVIIAISPSEV HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCHHH LGPSFQMSFAATLALVSGYQLWKDRRIRENAWLKLPVFRPVVAVAGFFGGVFLTSLIGGF CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHH STALFSIEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDTPLWKVVGFGLD HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LVIAVAKTVSGWGGDIGVGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLLVLI HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LPVPRPPDLVISEDGGLVALVETAAMASNRENPPDFIFDQWQRALVLPTHHPPKMLDGPA CCCCCCCCEEEECCCCEEEEEEHHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCC IPPGGEDRRVRLSREQQNEARTAMRAAAAGGETNRFSCVKKAWCTSRLGNGRVVTIIDNA CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC AYLGPACDSADIVVTPVRLRFNSCRSGATLFTGETLRRTGSVELRFADAGLEVATAFETL CCCCCCCCCCCEEEEEHEEEECCCCCCCEEEECHHHHCCCCEEEEEECCCCHHHHHHHHH SRPWMRQRAYDWRSNSFTESGLSGVSDSGE HHHHHHHHHCCCCCCCCCHHCCCCCCCCCC >Mature Secondary Structure MEELTTVELRPEAGAGLADSQGFPAPAVVNRPARTQSATPLRHRLPAAASQSLRAGIRML CCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHH GEEADHGRLLLFSPVFLGAGAAFWFLAPSDFSLVASLLCMLTPAAVVVVAGPSRPVLRAS CCCCCCCEEEEECHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHH FLALALFACGMLSAQFESWRASTVILDSSVTTTVTGRVERREGDGRGRWRYILSVTGTEK HHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECEEEECCCCCCCEEEEEEEECCCCC PELKRWPGRITAIVRGADTPFEIGDIVTGRARLTPPAGPALPELNDFSFSAYFDGIGANG CCHHHCCCEEEEEEECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEHHCCCCCCCC FFYGAPERVDLQAGPQPARSTSETMLEWLYQLRSRIGDRIRSILPGDTGAFAAALVTDER EECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH RAISNATTEALRQSGLAHIVAISGLNMALSAGIFFVGFRMLLSLFPGVAQAYPTKKIAAA HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHH GALIAVTAYYLISGFGVSAERAFIMMAIMLIAVFFDRPSISLRNVVLSALVIIAISPSEV HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCHHH LGPSFQMSFAATLALVSGYQLWKDRRIRENAWLKLPVFRPVVAVAGFFGGVFLTSLIGGF CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHH STALFSIEHFHRLTAYGLPANLATMPIISFIVMPAGLLAMLLMPFGLDTPLWKVVGFGLD HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LVIAVAKTVSGWGGDIGVGRLPAWYFAVAVAGFLLLTLLRTRLRHAGTSILAVSTLLVLI HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LPVPRPPDLVISEDGGLVALVETAAMASNRENPPDFIFDQWQRALVLPTHHPPKMLDGPA CCCCCCCCEEEECCCCEEEEEEHHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCC IPPGGEDRRVRLSREQQNEARTAMRAAAAGGETNRFSCVKKAWCTSRLGNGRVVTIIDNA CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC AYLGPACDSADIVVTPVRLRFNSCRSGATLFTGETLRRTGSVELRFADAGLEVATAFETL CCCCCCCCCCCEEEEEHEEEECCCCCCCEEEECHHHHCCCCEEEEEECCCCHHHHHHHHH SRPWMRQRAYDWRSNSFTESGLSGVSDSGE HHHHHHHHHCCCCCCCCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]