| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is secD [H]
Identifier: 209549097
GI number: 209549097
Start: 1527492
End: 1530032
Strand: Direct
Name: secD [H]
Synonym: Rleg2_1496
Alternate gene names: 209549097
Gene position: 1527492-1530032 (Clockwise)
Preceding gene: 209549096
Following gene: 209549098
Centisome position: 33.66
GC content: 62.5
Gene sequence:
>2541_bases ATGTTGCACTTTTCCCGCTGGAAAACACTTCTGATCTGGCTGGCCGCGTTTGCGGCCATCATCATTGCTGCGCCCAATCT GCTGAGCGAGGCGCAGCGTTCCTCTCTGCCGGGCTGGCTGCGGCAGGACCGCGTAACGCTCGGTCTCGATCTGCAGGGCG GCTCGCATATCGTTCTGAAGGTCGAGCGTTCCGACATCGTCAAGGACCGCCTGGAAGAAGCGGTCGCCAATGTCCGCAAC ACGCTGCGCGGCGCCGGCATCCGCTATACCGGGCTGACCGGCAACGACCAGACCGTCACCGTCCGGATCACCGATCCGGC TGAGACGCAAAAAGCGGTCGAGCTCCTGAAGCCTTTGACGACGGCCGGCGGACGTTCCGGACCGGAGGTCGCGCTGCAGC AGGGCGAGGAGGGGCAGCTCTCACTGCAGATTTCCGACGCCGGCATTACTGCTGACGTTGCTTCAGCCCGGACTCGGTCG CTCGATATCGTCGCCCGCCGTATCGCTGGATTCGGCCATGCGAATTTCATCGTTCGCCCCGATGGCACCGACCGCATCGT CGTGCAGGTGCTGGGATCGGTCGATGCGGAACGGCTGAAAAACCTCCTCAATCAACCGGCCAAGCTTTCCTTTCATCTGA TCGATGCAAGCATGTCGGGGCAGGAGGCGCTGAACGGCCGCTGGCCGGCGACATCGCAGGTGCTCTATTCGCTGGATGAT CCGCCGGTTCCTTATCTCGTCGATCGCACGGCTTTCCTCACCGGCAGCAACATGGTCGGTATCGAGCCGGTCGTCGACCC GCAGACCCAGGATAGCTCGATTGCCTACCGCCTCGATGCGGACGGAACGCGGCGGCTGGCTGAGGTGACGGGGCAGAATA TCGGCAAGCACCTTGCCATTGTCTTCGACGACCAGGTGATGTCGTCACCGGCCATCGATGCGGCGATCACCGGCGGCGAG GGGGCAATTTCGGCAAATTTCTCCGAGGATGGCGTCCGCGACCTGGCGATCATGCTGCGCGCCGGCGCCTTGCCGGCGAC GCTGACGAGCGTCGAGGAGCGCAGTGTCAGCCCGAGATTCGGCGCCGACTCGATCTTCTCCGGCCTCATTGCCGGCCTCG TCGCCGTCGTGCTGGTCGCGGCACTGATGATCGCGCTCTACCGCATCCTCGGCGTTATTGCCGTCGTCTCGCTCGTCTTC AACCTGATCTTCATCGTCGCGGCGCTCAGCCTTGCCGGCGCGACGCTCACCTTGCCAGGCATTGCCGGCATCGTGCTCAT CGTCGGCATGGCGGTCGACTCGAACGTTCTGATCTACGAGCGTATCCGTGAAGAGGAAAAAACCGCCCATTCCTTTGCAG AGGCCGCCGGCCGCGGTTTCTCGCGCGCCTTCGCAACAATTGTCGATGCGAATGTGACGATCTTCATCGCCGCAATCATC CTGTTTTTCCTCGGCAGCGAATCCATCCGCGGTTTCGCGGTGACGCTGGCGGTCGGCATCCTCACGACCGTCTTCACGGC TTTCACGCTGACACGCTCGATCGTCGCCGTCTGGCTGCAGCGGCGCCACCCCCGGCATCTGCCGAAAAGCGTTCTGACCC ATCTTTTCGAACACGCCAATATCCGGTTCATGGGGATCCGCCGTTACGTCTTTACGGCGTCGGCGATCATTTCGCTGATT GCCATGGCCGCCTTTGCCACTGCCGGCCTGCGGCTCGGCATTGATTTCACCGGCGGCTCGCTGATCGAGGTGACGGCGAA GCAGGGCAATGCCGACCTTGCCGATCTTCAATCGCGCCTCAACGATCTCAATCTCGGTGAGGTCAGCGTCACGCGCGCCG GAGGGCCGTCGAATGCACGGATCCGCATCGCCTCCCAGGGCGGCGGCGAGAATGCCGAGCAGTCTGCTGCGACGCTGGTG CGCGGCGAGCTCCAGGAGGATTATGATTTTCGCCGCGTCGAGGTCGTCGGCCCCGCCATCTCCGGCGAATTGACGATGAT GGCGACGCTCGGCGTGCTGGCGGCACTGGCGGCGATCCTGATCTACATCTGGGTCCGCTTCGAATGGCAGTTCGCGGTCG GCGCTATCGTCGCGACGCTGCACGACGTCATCATCTTGCTCGGTCTCTTCGTCCTCACCGGCATGGAATTCAACCTGACG AGCGTCGCCGCCGTGCTGACCGTTGTCGGTTATTCCCTGAACGACACGGTGGTGGTCTATGACCGAATGCGCGAGAATCT GAAGCGATACAAGAAGATGCCGCTGCCGATCCTGATCGATGCGTCGATCAACCAGACGCTGTCGCGCACCATACTGACCG CGGCGACGACGCTGCTCGCCTTGCTCGCGCTCTATCTTTTCGGAGGAGAGGTCATCCGCTCCTTCACCTTTACGATGCTC TTCGGCGTCGCTCTCGGCACCTTCTCTTCGATCTATATCGCCGCTCCTGTGCTGATCGTCTTCCGGCTGCGGCCGGAAAG CCCCGATGGGGAAGAGAGCAACAAGACGGATGCTGGTGTAAAATCCGGCACGGTGGTTTGA
Upstream 100 bases:
>100_bases CGGTATTTCGGATGTGCGCGTCAAGGGTGAACCCGTCAAGGCCGACGCAGCGTAACAAGCGATAACGGCAGCACTGCCGG ATCGGAAGATCGTCGAGAGA
Downstream 100 bases:
>100_bases AAACATGGCAAAAGGCATAGAAATCCGCGCCGCGCATTTTCCCGGGCGCGCGCCGATCGATACTTACGGCAATGGCGGTT TCCGCTTTGCCGACATGTCG
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MLHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRN TLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLTTAGGRSGPEVALQQGEEGQLSLQISDAGITADVASARTRS LDIVARRIAGFGHANFIVRPDGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYSLDD PPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKHLAIVFDDQVMSSPAIDAAITGGE GAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRFGADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVF NLIFIVAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAII LFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAIISLI AMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLADLQSRLNDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLV RGELQEDYDFRRVEVVGPAISGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFVLTGMEFNLT SVAAVLTVVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTILTAATTLLALLALYLFGGEVIRSFTFTML FGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
Sequences:
>Translated_846_residues MLHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRN TLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLTTAGGRSGPEVALQQGEEGQLSLQISDAGITADVASARTRS LDIVARRIAGFGHANFIVRPDGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYSLDD PPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKHLAIVFDDQVMSSPAIDAAITGGE GAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRFGADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVF NLIFIVAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAII LFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAIISLI AMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLADLQSRLNDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLV RGELQEDYDFRRVEVVGPAISGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFVLTGMEFNLT SVAAVLTVVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTILTAATTLLALLALYLFGGEVIRSFTFTML FGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV >Mature_846_residues MLHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRN TLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLTTAGGRSGPEVALQQGEEGQLSLQISDAGITADVASARTRS LDIVARRIAGFGHANFIVRPDGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYSLDD PPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKHLAIVFDDQVMSSPAIDAAITGGE GAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRFGADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVF NLIFIVAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAII LFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAIISLI AMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLADLQSRLNDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLV RGELQEDYDFRRVEVVGPAISGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFVLTGMEFNLT SVAAVLTVVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTILTAATTLLALLALYLFGGEVIRSFTFTML FGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=503, Percent_Identity=32.6043737574553, Blast_Score=239, Evalue=4e-64, Organism=Escherichia coli, GI1786610, Length=299, Percent_Identity=34.1137123745819, Blast_Score=191, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 90545; Mature: 90545
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLK CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCEEEEEEECCCCEEEEE VERSDIVKDRLEEAVANVRNTLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLT ECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHH TAGGRSGPEVALQQGEEGQLSLQISDAGITADVASARTRSLDIVARRIAGFGHANFIVRP HCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC DGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYSLDD CCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCCHHHHEEECCC PPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKHLAI CCCCCEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEE VFDDQVMSSPAIDAAITGGEGAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRF EECCHHHCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC GADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVFNLIFIVAALSLAGATLTLPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH IAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAII HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH LFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTHLFEHAN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC IRFMGIRRYVFTASAIISLIAMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLADLQSRL EEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHH NDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLVRGELQEDYDFRRVEVVGPAI CCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC SGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFVLTGMEFNLT CCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH SVAAVLTVVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTILTAATTLLA HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHH LLALYLFGGEVIRSFTFTMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCC KSGTVV CCCCCC >Mature Secondary Structure MLHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLK CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCEEEEEEECCCCEEEEE VERSDIVKDRLEEAVANVRNTLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLT ECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHH TAGGRSGPEVALQQGEEGQLSLQISDAGITADVASARTRSLDIVARRIAGFGHANFIVRP HCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC DGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYSLDD CCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCCHHHHEEECCC PPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKHLAI CCCCCEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEE VFDDQVMSSPAIDAAITGGEGAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRF EECCHHHCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC GADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVFNLIFIVAALSLAGATLTLPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH IAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAII HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH LFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTHLFEHAN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC IRFMGIRRYVFTASAIISLIAMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLADLQSRL EEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHH NDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLVRGELQEDYDFRRVEVVGPAI CCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC SGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFVLTGMEFNLT CCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH SVAAVLTVVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTILTAATTLLA HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHH LLALYLFGGEVIRSFTFTMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCC KSGTVV CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]