Click here to switch to the map view.

The map label for this gene is ygeR [H]

Identifier: 209549094

GI number: 209549094

Start: 1524230

End: 1525822

Strand: Direct

Name: ygeR [H]

Synonym: Rleg2_1493

Alternate gene names: 209549094

Gene position: 1524230-1525822 (Clockwise)

Preceding gene: 209549093

Following gene: 209549096

Centisome position: 33.59

GC content: 63.84

Gene sequence:

>1593_bases
ATGCGTTTCAGTCTTTCGCCGAAGTTCGGGAAGTCGGCCGGTAATCTTCTGGTTGTGAGCCTGCTGGCAAGTGCCGCAAC
AGGCTGCAGTTCCGATGTGACACGGTTTGGCGGCTTGTTTTCCTCCTCAGGGCAGGATCAGATCACCACAAGTTCCATTC
CGCGCAGGGGCGGCGCTCAGGCTGATCCTGTGCCGCGCGCCGATCTCGGCGGCTCCGCCGTTGCAAGCCAGTCGGGTTAT
GGTGGTGGCAATGGCGCACTGAACCAGCCTTATCCGTCGAACCCGAGTTATGATCCGGTCCGCACGTCGAGCGCCCGTAT
GGCCTCCGCGCCGGTTGCGGTGCAGCGTTCCGAGCTTGCAGCTCCGGGCGCCGTTGCGCCAGTCCGGCAGCGGGAAAAGG
AAGTCGCGCTCGCCCAGCCTTTCCCTTCAGCGCCTCAGGCGGAAAAAAACCGATTGGTGGCCCCGACCGCGCCGAAGCTG
ACGCCTGATACTTTGACGACGGGCACGACACCGAAGGTGTCCGGCTGGTCCGGGACCAATGCCCCTTCCGTAACGCTGCG
TCCGGGTGAAAGCGTTGCCACCCTGTCCAGGCGCTTCGGTGTTCCGGAAAAGGAAATCCTGCGCGTCAACAACCTGAAGA
CGGCTTCCGCCGCCACGCCCGGCCAGGCGATACTGATCCCGACCTTCAATGGCGGCAATGCCGCCAAGGCGGCGTCACAG
GCGGCTGACCTCTCCAAGCCCGGCAAGATGCCGGAACCGGTGAAGGCGCCTGAGCAGAACGTCGCCGTCGTTCCCGGCGC
CAATTCCGCTCGCGACAAGACCATGGCGAGTGCCGATGCCACCGGCAAGCTTCCGCCCGGCGCCGGCAAGGATCCGAAAG
CGCCTGCCGGCACCTATGTCGTCAAGCAAGGCGATTCGCTGGCAAAGATCGCCAAGGCGACCGGCACCAAGATCGACGAT
CTCAAGGCCGCCAACAATCTGTCGGCCAGCTCGGTGAGGGTCGGTCAGGCGCTGAAGATCCCGAGCGGCACCGCCGACAA
TATCAAGACAGCATCGATCCAGCCGCAGAAGGTCGATCCGAAGCCGGCCCAAACGGCGCCCGCCCAGCAGACGGCCTCCG
TCGAACCCGCACCCTATAAGGCGCCGGTGGCCACTCAGACGGTCGACGATGTCGAGAAGAAGTCCGACGTCAGCTCCGCC
GCACCGGAATCGACCGGCATCGGCAAGTATCGCTGGCCGGTTCGCGGCCAGGTCATTGCTTCATACGGCGCCAACGTCAA
CGGCAACCGCAATGACGGCATCGACATCTCCGTGCCGCAGGGAACGCCGATCAAGGCTGCCGAAAACGGCGTCGTCATCT
ATGCTGGCAATGGCCTGAAGGAACTCGGCAATACGGTTCTCGTCCGTCACGACGACGGCACCGTCACCGTCTACGGCAAT
GCCGATACACTGAGCGTCGCCCGCGGCCAGAAGATCCAGCGTGGCCAGACCGTCGCCGTCTCCGGCATGAGCGGCGATGT
CAAGCAGCCGCAGGTCCATTTCGAGGTGCGCAAGGACGCATCTCCGGTCAATCCGATGACTTTCCTGGAATAG

Upstream 100 bases:

>100_bases
TCTCAAAAATATCGCACTGATTCCAGCATCTTAACTGCGTGGTAATACTAACGCGTTTTAATAGACTCACAAATGGTTGC
GTTCTCAGTGGGTCGAGTCA

Downstream 100 bases:

>100_bases
GTACAGCGTCCCAGGAAGCGCAAAAGCCCGGCCCACCCGCCGGGCTTTTGTCATTTAAAGCATGTCGCGCAAAAGTGTGC
CGCGGTTTTCCCAGGCAAAG

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MRFSLSPKFGKSAGNLLVVSLLASAATGCSSDVTRFGGLFSSSGQDQITTSSIPRRGGAQADPVPRADLGGSAVASQSGY
GGGNGALNQPYPSNPSYDPVRTSSARMASAPVAVQRSELAAPGAVAPVRQREKEVALAQPFPSAPQAEKNRLVAPTAPKL
TPDTLTTGTTPKVSGWSGTNAPSVTLRPGESVATLSRRFGVPEKEILRVNNLKTASAATPGQAILIPTFNGGNAAKAASQ
AADLSKPGKMPEPVKAPEQNVAVVPGANSARDKTMASADATGKLPPGAGKDPKAPAGTYVVKQGDSLAKIAKATGTKIDD
LKAANNLSASSVRVGQALKIPSGTADNIKTASIQPQKVDPKPAQTAPAQQTASVEPAPYKAPVATQTVDDVEKKSDVSSA
APESTGIGKYRWPVRGQVIASYGANVNGNRNDGIDISVPQGTPIKAAENGVVIYAGNGLKELGNTVLVRHDDGTVTVYGN
ADTLSVARGQKIQRGQTVAVSGMSGDVKQPQVHFEVRKDASPVNPMTFLE

Sequences:

>Translated_530_residues
MRFSLSPKFGKSAGNLLVVSLLASAATGCSSDVTRFGGLFSSSGQDQITTSSIPRRGGAQADPVPRADLGGSAVASQSGY
GGGNGALNQPYPSNPSYDPVRTSSARMASAPVAVQRSELAAPGAVAPVRQREKEVALAQPFPSAPQAEKNRLVAPTAPKL
TPDTLTTGTTPKVSGWSGTNAPSVTLRPGESVATLSRRFGVPEKEILRVNNLKTASAATPGQAILIPTFNGGNAAKAASQ
AADLSKPGKMPEPVKAPEQNVAVVPGANSARDKTMASADATGKLPPGAGKDPKAPAGTYVVKQGDSLAKIAKATGTKIDD
LKAANNLSASSVRVGQALKIPSGTADNIKTASIQPQKVDPKPAQTAPAQQTASVEPAPYKAPVATQTVDDVEKKSDVSSA
APESTGIGKYRWPVRGQVIASYGANVNGNRNDGIDISVPQGTPIKAAENGVVIYAGNGLKELGNTVLVRHDDGTVTVYGN
ADTLSVARGQKIQRGQTVAVSGMSGDVKQPQVHFEVRKDASPVNPMTFLE
>Mature_530_residues
MRFSLSPKFGKSAGNLLVVSLLASAATGCSSDVTRFGGLFSSSGQDQITTSSIPRRGGAQADPVPRADLGGSAVASQSGY
GGGNGALNQPYPSNPSYDPVRTSSARMASAPVAVQRSELAAPGAVAPVRQREKEVALAQPFPSAPQAEKNRLVAPTAPKL
TPDTLTTGTTPKVSGWSGTNAPSVTLRPGESVATLSRRFGVPEKEILRVNNLKTASAATPGQAILIPTFNGGNAAKAASQ
AADLSKPGKMPEPVKAPEQNVAVVPGANSARDKTMASADATGKLPPGAGKDPKAPAGTYVVKQGDSLAKIAKATGTKIDD
LKAANNLSASSVRVGQALKIPSGTADNIKTASIQPQKVDPKPAQTAPAQQTASVEPAPYKAPVATQTVDDVEKKSDVSSA
APESTGIGKYRWPVRGQVIASYGANVNGNRNDGIDISVPQGTPIKAAENGVVIYAGNGLKELGNTVLVRHDDGTVTVYGN
ADTLSVARGQKIQRGQTVAVSGMSGDVKQPQVHFEVRKDASPVNPMTFLE

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=236, Percent_Identity=33.0508474576271, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1789099, Length=262, Percent_Identity=32.824427480916, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082297, Length=123, Percent_Identity=35.7723577235772, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081989, Length=97, Percent_Identity=35.0515463917526, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 54230; Mature: 54230

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSLSPKFGKSAGNLLVVSLLASAATGCSSDVTRFGGLFSSSGQDQITTSSIPRRGGAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHCCCCCCCEECCCCCCCCCCC
ADPVPRADLGGSAVASQSGYGGGNGALNQPYPSNPSYDPVRTSSARMASAPVAVQRSELA
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEHHHCC
APGAVAPVRQREKEVALAQPFPSAPQAEKNRLVAPTAPKLTPDTLTTGTTPKVSGWSGTN
CCCCCCHHHHHHHHHEEECCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
APSVTLRPGESVATLSRRFGVPEKEILRVNNLKTASAATPGQAILIPTFNGGNAAKAASQ
CCEEEECCCCHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
AADLSKPGKMPEPVKAPEQNVAVVPGANSARDKTMASADATGKLPPGAGKDPKAPAGTYV
HHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
VKQGDSLAKIAKATGTKIDDLKAANNLSASSVRVGQALKIPSGTADNIKTASIQPQKVDP
EECCCHHHHHHHHCCCCHHHHHHHCCCCCCCEECCCEEECCCCCCCCEEECCCCCCCCCC
KPAQTAPAQQTASVEPAPYKAPVATQTVDDVEKKSDVSSAAPESTGIGKYRWPVRGQVIA
CCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCEECCCCCEEEE
SYGANVNGNRNDGIDISVPQGTPIKAAENGVVIYAGNGLKELGNTVLVRHDDGTVTVYGN
ECCCCCCCCCCCCEEEECCCCCCCEECCCCEEEEECCCHHHCCCEEEEEECCCEEEEEEC
ADTLSVARGQKIQRGQTVAVSGMSGDVKQPQVHFEVRKDASPVNPMTFLE
CCEEEHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRFSLSPKFGKSAGNLLVVSLLASAATGCSSDVTRFGGLFSSSGQDQITTSSIPRRGGAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHCCCCCCCEECCCCCCCCCCC
ADPVPRADLGGSAVASQSGYGGGNGALNQPYPSNPSYDPVRTSSARMASAPVAVQRSELA
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEHHHCC
APGAVAPVRQREKEVALAQPFPSAPQAEKNRLVAPTAPKLTPDTLTTGTTPKVSGWSGTN
CCCCCCHHHHHHHHHEEECCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
APSVTLRPGESVATLSRRFGVPEKEILRVNNLKTASAATPGQAILIPTFNGGNAAKAASQ
CCEEEECCCCHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
AADLSKPGKMPEPVKAPEQNVAVVPGANSARDKTMASADATGKLPPGAGKDPKAPAGTYV
HHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
VKQGDSLAKIAKATGTKIDDLKAANNLSASSVRVGQALKIPSGTADNIKTASIQPQKVDP
EECCCHHHHHHHHCCCCHHHHHHHCCCCCCCEECCCEEECCCCCCCCEEECCCCCCCCCC
KPAQTAPAQQTASVEPAPYKAPVATQTVDDVEKKSDVSSAAPESTGIGKYRWPVRGQVIA
CCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCEECCCCCEEEE
SYGANVNGNRNDGIDISVPQGTPIKAAENGVVIYAGNGLKELGNTVLVRHDDGTVTVYGN
ECCCCCCCCCCCCEEEECCCCCCCEECCCCEEEEECCCHHHCCCEEEEEECCCEEEEEEC
ADTLSVARGQKIQRGQTVAVSGMSGDVKQPQVHFEVRKDASPVNPMTFLE
CCEEEHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]