Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 209549050

GI number: 209549050

Start: 1470929

End: 1471414

Strand: Reverse

Name: ybaO [H]

Synonym: Rleg2_1447

Alternate gene names: 209549050

Gene position: 1471414-1470929 (Counterclockwise)

Preceding gene: 209549053

Following gene: 209549048

Centisome position: 32.42

GC content: 62.96

Gene sequence:

>486_bases
ATGGAATTCGAGCCGGGAGATATCCGCATATTGAAGGCGCTCCAGAGCGAGGGACGGCTGACCAACCAGGAGCTTGCCGA
ACGCGTGGGGATGTCGACCTCGCCCTGCTGGCGCAGAGTGAAACGGCTTGAAGAGGCCGGCGTCATCCGCGGCTATCAGG
CTCTCGTCGATCGCCGCGCCGTCGGCCTCGGCGTCCTCGCCTTCGTGCGTGTGCAGATCGACACGCATTCCCATGACGAG
GCCCAGCGCTTCGAGCGCGAGGTCGGCGAGCTGGAAGCGGTCATCGCCTGCTATTCCGTTGCCGGCGAAGCTGATTTCCT
GCTGCAGGTGGTCGCGGCCGATCTCGACAATTATGCCGAATTCGCCATGACGGTGATCCGTCGCCTGCCCGGCATCAAGG
AGATGCATACGATGTTCGTGCTGAAGGACATCAAGGCATCGACGATCCTGCCCGTGCAGCTATCGAGCGCCAGCCGTTCG
CGGTGA

Upstream 100 bases:

>100_bases
TCGCAAGGCATAGAAATATCCTGCCTATTCCTGTCGCGACCCGGGCGTTTTTGGTAGGATCTTCCTATCCGTCGATGAAG
CTAGAAAGGATTTACCGATC

Downstream 100 bases:

>100_bases
AGCGCAGAGATCGTCGCCAAAACCGCTGCAAGCTTTTGCTGGAATTGCTCTAAAAGGCTGTGCTGCTGGTGGCGATCAAA
TCGCAGGAGAGGCGCAGGCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MEFEPGDIRILKALQSEGRLTNQELAERVGMSTSPCWRRVKRLEEAGVIRGYQALVDRRAVGLGVLAFVRVQIDTHSHDE
AQRFEREVGELEAVIACYSVAGEADFLLQVVAADLDNYAEFAMTVIRRLPGIKEMHTMFVLKDIKASTILPVQLSSASRS
R

Sequences:

>Translated_161_residues
MEFEPGDIRILKALQSEGRLTNQELAERVGMSTSPCWRRVKRLEEAGVIRGYQALVDRRAVGLGVLAFVRVQIDTHSHDE
AQRFEREVGELEAVIACYSVAGEADFLLQVVAADLDNYAEFAMTVIRRLPGIKEMHTMFVLKDIKASTILPVQLSSASRS
R
>Mature_161_residues
MEFEPGDIRILKALQSEGRLTNQELAERVGMSTSPCWRRVKRLEEAGVIRGYQALVDRRAVGLGVLAFVRVQIDTHSHDE
AQRFEREVGELEAVIACYSVAGEADFLLQVVAADLDNYAEFAMTVIRRLPGIKEMHTMFVLKDIKASTILPVQLSSASRS
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=147, Percent_Identity=38.0952380952381, Blast_Score=119, Evalue=8e-29,
Organism=Escherichia coli, GI1787116, Length=147, Percent_Identity=35.3741496598639, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18033; Mature: 18033

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFEPGDIRILKALQSEGRLTNQELAERVGMSTSPCWRRVKRLEEAGVIRGYQALVDRRA
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLGVLAFVRVQIDTHSHDEAQRFEREVGELEAVIACYSVAGEADFLLQVVAADLDNYAE
HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FAMTVIRRLPGIKEMHTMFVLKDIKASTILPVQLSSASRSR
HHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MEFEPGDIRILKALQSEGRLTNQELAERVGMSTSPCWRRVKRLEEAGVIRGYQALVDRRA
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLGVLAFVRVQIDTHSHDEAQRFEREVGELEAVIACYSVAGEADFLLQVVAADLDNYAE
HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FAMTVIRRLPGIKEMHTMFVLKDIKASTILPVQLSSASRSR
HHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]