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The map label for this gene is yahB [H]

Identifier: 209549031

GI number: 209549031

Start: 1452353

End: 1453321

Strand: Direct

Name: yahB [H]

Synonym: Rleg2_1428

Alternate gene names: 209549031

Gene position: 1452353-1453321 (Clockwise)

Preceding gene: 209549029

Following gene: 209549036

Centisome position: 32.0

GC content: 63.47

Gene sequence:

>969_bases
ATGCTTCCGAACCCAACCCTGGACCAGTTGCAGGTGTTTTTGACCGTTGCCGAGACCGGCAGCTTCTCGGCTGCGTCGCG
GGCGCTGAACCGGGCTCAGTCGGTGGTCAGCTATACGATCGCCAATCTGGAGGCGCAGCTTGAAGTGCCGCTTTTCGAGC
GCTCCGGCGCCCGCCAGCCAAAGCTGACGGAGGCAGGCAAGGCGATGCTGGAGGATGCGCGCCGTATCCTCGGCGATCTG
CAGGTCATGCGGGCGCGCGTCAAGAGCCTGAAGGAAGGGCTCGAAGCGGAGGTTTCCGTCGCCATCAGCGTTATGGTGCC
GTCAAAGGCCGTGGTCGACGTGCTCCACGAATTCCGTGAGATGTTCCCGTCCGTCTCGTTGAACCTCAATGTCGGTGAGC
TCGGAATGGTCATGGATCTGGTCATGAGTGGCAAGGCGACGATCGGGATCGGCGGAGCGGTTCTGAAGCAGGACGATTCG
GTCGTCACCGAGCGCATCGGCCACTCCTTCATGATGCCTGTCGCCGCGCCTAACCACCCGCTTGCCGGGCTCGACCGGTC
GCTGACGCTCGGCGACGTGCGCGATGAGGTGCAGCTCGTCGTCACCGATGCGTCGGGCCTGACGAAGGGGCGCGATTTCA
ACGTGCTGTCCTACAAGACATGGCGCGTCAGCGATATCACCACGAAGCATCAGCTGATCAAGGCCGGCCTCGGCTGGGGC
GGCCTCCCGGCGTCGCTCATCCATGACGATCTCCTGAGCGGCGCGCTCGTCCATCTTGATCTCGATGCCTACGAACAGGG
GGAGTATCCCATCTATTCGATGCGCCAGCTCGCCAACCCGCCCGGACCTGCCGCCACCTGGATGATCGACGCCTTCCGCA
CCCGGCTTACCTATTGCCCGAGCCAGGCGGATTTCCACGCCCAGATCGCGGAACTGCGTGAACCCGCAATCCCGCTCGCG
GCTGAATAA

Upstream 100 bases:

>100_bases
TTGGGAGGTGAGCCGCAGTCTCGAAGCGGAAAATAGGTCTGGCTTGCTATCGAAAAAACGGTGATAATGTCGATCGAAAC
TATCGATGGAATGGATGGAT

Downstream 100 bases:

>100_bases
AGAAGGCGCGGCCGACGCGCCTTCCTTTTATTCTTAAAGCACCAGCCTGAACTTCGAGAAGCCGTCGGCACCGTCGCCGG
CATCTTCGATCTTGACGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLPNPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLEAQLEVPLFERSGARQPKLTEAGKAMLEDARRILGDL
QVMRARVKSLKEGLEAEVSVAISVMVPSKAVVDVLHEFREMFPSVSLNLNVGELGMVMDLVMSGKATIGIGGAVLKQDDS
VVTERIGHSFMMPVAAPNHPLAGLDRSLTLGDVRDEVQLVVTDASGLTKGRDFNVLSYKTWRVSDITTKHQLIKAGLGWG
GLPASLIHDDLLSGALVHLDLDAYEQGEYPIYSMRQLANPPGPAATWMIDAFRTRLTYCPSQADFHAQIAELREPAIPLA
AE

Sequences:

>Translated_322_residues
MLPNPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLEAQLEVPLFERSGARQPKLTEAGKAMLEDARRILGDL
QVMRARVKSLKEGLEAEVSVAISVMVPSKAVVDVLHEFREMFPSVSLNLNVGELGMVMDLVMSGKATIGIGGAVLKQDDS
VVTERIGHSFMMPVAAPNHPLAGLDRSLTLGDVRDEVQLVVTDASGLTKGRDFNVLSYKTWRVSDITTKHQLIKAGLGWG
GLPASLIHDDLLSGALVHLDLDAYEQGEYPIYSMRQLANPPGPAATWMIDAFRTRLTYCPSQADFHAQIAELREPAIPLA
AE
>Mature_322_residues
MLPNPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLEAQLEVPLFERSGARQPKLTEAGKAMLEDARRILGDL
QVMRARVKSLKEGLEAEVSVAISVMVPSKAVVDVLHEFREMFPSVSLNLNVGELGMVMDLVMSGKATIGIGGAVLKQDDS
VVTERIGHSFMMPVAAPNHPLAGLDRSLTLGDVRDEVQLVVTDASGLTKGRDFNVLSYKTWRVSDITTKHQLIKAGLGWG
GLPASLIHDDLLSGALVHLDLDAYEQGEYPIYSMRQLANPPGPAATWMIDAFRTRLTYCPSQADFHAQIAELREPAIPLA
AE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=255, Percent_Identity=28.6274509803922, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787949, Length=283, Percent_Identity=28.9752650176678, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082024, Length=256, Percent_Identity=30.46875, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786713, Length=263, Percent_Identity=30.0380228136882, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789492, Length=258, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=201, Percent_Identity=28.8557213930348, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786401, Length=277, Percent_Identity=26.3537906137184, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789639, Length=277, Percent_Identity=24.187725631769, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=255, Percent_Identity=30.1960784313725, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788296, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=26.8, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=246, Percent_Identity=23.1707317073171, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=32.1917808219178, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=178, Percent_Identity=25.8426966292135, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788481, Length=257, Percent_Identity=26.4591439688716, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34902; Mature: 34902

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPNPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLEAQLEVPLFERSGARQP
CCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHCCCCCCC
KLTEAGKAMLEDARRILGDLQVMRARVKSLKEGLEAEVSVAISVMVPSKAVVDVLHEFRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHH
MFPSVSLNLNVGELGMVMDLVMSGKATIGIGGAVLKQDDSVVTERIGHSFMMPVAAPNHP
HCCCCEEECCHHHHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHCCCCEECCCCCCCCC
LAGLDRSLTLGDVRDEVQLVVTDASGLTKGRDFNVLSYKTWRVSDITTKHQLIKAGLGWG
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCC
GLPASLIHDDLLSGALVHLDLDAYEQGEYPIYSMRQLANPPGPAATWMIDAFRTRLTYCP
CCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
SQADFHAQIAELREPAIPLAAE
CCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLPNPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLEAQLEVPLFERSGARQP
CCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHCCCCCCC
KLTEAGKAMLEDARRILGDLQVMRARVKSLKEGLEAEVSVAISVMVPSKAVVDVLHEFRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHH
MFPSVSLNLNVGELGMVMDLVMSGKATIGIGGAVLKQDDSVVTERIGHSFMMPVAAPNHP
HCCCCEEECCHHHHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHCCCCEECCCCCCCCC
LAGLDRSLTLGDVRDEVQLVVTDASGLTKGRDFNVLSYKTWRVSDITTKHQLIKAGLGWG
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCC
GLPASLIHDDLLSGALVHLDLDAYEQGEYPIYSMRQLANPPGPAATWMIDAFRTRLTYCP
CCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
SQADFHAQIAELREPAIPLAAE
CCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]