BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is yusZ [H]

Identifier: 209548971

GI number: 209548971

Start: 1386911

End: 1387762

Strand: Reverse

Name: yusZ [H]

Synonym: Rleg2_1368

Alternate gene names: 209548971

Gene position: 1387762-1386911 (Counterclockwise)

Preceding gene: 209548974

Following gene: 209548969

Centisome position: 30.58

GC content: 63.85

Gene sequence:

>852_bases
ATGAAAGTCTGGTTCATCACTGGTGCATCCCGCGGCTTTGGCGCGCTGATGACCAAAGAAGCCATTGCCGCTGGCGATGC
CGTCATCGCCACCGCCCGCAACCCGAAGACCGTCACCGAGCAGTTCGGCAATCATCCGAACCTCCTCGCTGTCGCGCTTG
ACGTCACCAACGAGGTCCAGGCGAAAGAGGCTGCGGCAGCCGGCGTCGCTCGCTTCGGCCGCATTGATGTTCTCGCCAAC
AATGCCGGCTACGGCCTGCTCGGCGCCGTCGAGGAGGCCACGGCCGATGAGATCGAAAAACTCTATGCCACGAATGTCTT
CGGCCTTCTGAAGGTGACGCGCGCCGTGCTGCCCTATCTGCGGCGCCAGCGTTCCGGCCACGTCCTGAACTTCTCCTCGA
TCGGCGGTTACTTCGGCTATCCCGGCTGGGGCGTCTACGGCTCGACGAAATTCGCCGTCGAAGGCCTGTCGGAATCGATG
GCCGCCGAACTCGAACCCTTCGGCATCAAGGTGACGATCGTCGAGCCCGGATTCTTCCGCACCGACTTTCTCGCCGATAC
CTCGCTGGCGGTGAGCCCGGCCTCGATCGCCGATTACGAAGGCACGCCGGCCGGCAACATGCGCAATTTCCCCGCCGACG
CCAATCATGCCCAGCCCGGCAACCCCGCCAAGCTCGCCGCCGGCATCATGACAATGGTCAATTCGGCCAACCCGCCGCTG
CGCATGCCGTTCGGCAGCGACACGGTGGCGATGATCGAAGCGCAGCATGCGAGCGTCGAAAAGGAACTTGCCGGCTGGCG
TGAACTTGCCGTCTCCACGGATTTTCCGAGCGATGCGACGGCCTCGGCCTGA

Upstream 100 bases:

>100_bases
TAACAAATCTTATACAGCAACGGATTTTCGGTCAAATTCAACCCGTCAGCACAGAGATGCGACGCCGAGACAACCAAATA
GTCCTCGAAAGGAATTCGTC

Downstream 100 bases:

>100_bases
TACCCAAGACTATAACCTGCGCCGCTTTCCGGATATCGGGGTGCGGCGCAGGTTCGCTCGTGACCAGAAGGCCGACCGCC
TCACTTCATTTGCCGACCTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKVWFITGASRGFGALMTKEAIAAGDAVIATARNPKTVTEQFGNHPNLLAVALDVTNEVQAKEAAAAGVARFGRIDVLAN
NAGYGLLGAVEEATADEIEKLYATNVFGLLKVTRAVLPYLRRQRSGHVLNFSSIGGYFGYPGWGVYGSTKFAVEGLSESM
AAELEPFGIKVTIVEPGFFRTDFLADTSLAVSPASIADYEGTPAGNMRNFPADANHAQPGNPAKLAAGIMTMVNSANPPL
RMPFGSDTVAMIEAQHASVEKELAGWRELAVSTDFPSDATASA

Sequences:

>Translated_283_residues
MKVWFITGASRGFGALMTKEAIAAGDAVIATARNPKTVTEQFGNHPNLLAVALDVTNEVQAKEAAAAGVARFGRIDVLAN
NAGYGLLGAVEEATADEIEKLYATNVFGLLKVTRAVLPYLRRQRSGHVLNFSSIGGYFGYPGWGVYGSTKFAVEGLSESM
AAELEPFGIKVTIVEPGFFRTDFLADTSLAVSPASIADYEGTPAGNMRNFPADANHAQPGNPAKLAAGIMTMVNSANPPL
RMPFGSDTVAMIEAQHASVEKELAGWRELAVSTDFPSDATASA
>Mature_283_residues
MKVWFITGASRGFGALMTKEAIAAGDAVIATARNPKTVTEQFGNHPNLLAVALDVTNEVQAKEAAAAGVARFGRIDVLAN
NAGYGLLGAVEEATADEIEKLYATNVFGLLKVTRAVLPYLRRQRSGHVLNFSSIGGYFGYPGWGVYGSTKFAVEGLSESM
AAELEPFGIKVTIVEPGFFRTDFLADTSLAVSPASIADYEGTPAGNMRNFPADANHAQPGNPAKLAAGIMTMVNSANPPL
RMPFGSDTVAMIEAQHASVEKELAGWRELAVSTDFPSDATASA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=248, Percent_Identity=31.8548387096774, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI223718074, Length=255, Percent_Identity=32.9411764705882, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI20149619, Length=241, Percent_Identity=29.045643153527, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI22507405, Length=192, Percent_Identity=38.5416666666667, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI150247226, Length=182, Percent_Identity=37.3626373626374, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40548397, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI214010158, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI214010156, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI22758144, Length=186, Percent_Identity=34.9462365591398, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI4503817, Length=215, Percent_Identity=24.6511627906977, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI44680136, Length=119, Percent_Identity=39.4957983193277, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI44680133, Length=119, Percent_Identity=39.4957983193277, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI17738292, Length=119, Percent_Identity=39.4957983193277, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI50726952, Length=187, Percent_Identity=35.8288770053476, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI59889578, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=29.1457286432161, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI157739938, Length=156, Percent_Identity=29.4871794871795, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI40254992, Length=192, Percent_Identity=30.7291666666667, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI32483357, Length=187, Percent_Identity=26.7379679144385, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI210032110, Length=204, Percent_Identity=25.9803921568627, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4504503, Length=190, Percent_Identity=32.6315789473684, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=199, Percent_Identity=26.6331658291457, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=27.807486631016, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=27.807486631016, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4758504, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI66933014, Length=158, Percent_Identity=32.9113924050633, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI210032112, Length=129, Percent_Identity=29.4573643410853, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=180, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=25.2577319587629, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=36.5168539325843, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786701, Length=183, Percent_Identity=31.1475409836066, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=29.7297297297297, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=27.4725274725275, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=25.1336898395722, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787526, Length=190, Percent_Identity=27.8947368421053, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788459, Length=132, Percent_Identity=31.0606060606061, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=190, Percent_Identity=31.5789473684211, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=31.2820512820513, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=191, Percent_Identity=30.8900523560209, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=191, Percent_Identity=30.8900523560209, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=203, Percent_Identity=33.0049261083744, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=30.9644670050761, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=187, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=28.4210526315789, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=186, Percent_Identity=26.8817204301075, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=31.0526315789474, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=205, Percent_Identity=30.7317073170732, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=242, Percent_Identity=29.7520661157025, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=28, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=31.25, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=29.6875, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=34.1968911917098, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6322067, Length=228, Percent_Identity=28.5087719298246, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=205, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=129, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=184, Percent_Identity=24.4565217391304, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=33.1550802139037, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=34.0425531914894, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=33.695652173913, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21358495, Length=250, Percent_Identity=28.4, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=29.6296296296296, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=28.3422459893048, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=32.8358208955224, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI21356301, Length=180, Percent_Identity=29.4444444444444, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=27.7486910994764, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=201, Percent_Identity=28.3582089552239, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24641388, Length=207, Percent_Identity=29.951690821256, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571387, Length=209, Percent_Identity=30.1435406698565, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24663911, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21355631, Length=214, Percent_Identity=27.1028037383178, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24648944, Length=201, Percent_Identity=29.8507462686567, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640492, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24651139, Length=169, Percent_Identity=27.810650887574, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI281364494, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357673, Length=197, Percent_Identity=27.4111675126904, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581726, Length=151, Percent_Identity=26.4900662251656, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29791; Mature: 29791

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVWFITGASRGFGALMTKEAIAAGDAVIATARNPKTVTEQFGNHPNLLAVALDVTNEVQ
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCEEEEEEECCCHHH
AKEAAAAGVARFGRIDVLANNAGYGLLGAVEEATADEIEKLYATNVFGLLKVTRAVLPYL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQRSGHVLNFSSIGGYFGYPGWGVYGSTKFAVEGLSESMAAELEPFGIKVTIVEPGFFR
HHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
TDFLADTSLAVSPASIADYEGTPAGNMRNFPADANHAQPGNPAKLAAGIMTMVNSANPPL
HHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
RMPFGSDTVAMIEAQHASVEKELAGWRELAVSTDFPSDATASA
ECCCCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure
MKVWFITGASRGFGALMTKEAIAAGDAVIATARNPKTVTEQFGNHPNLLAVALDVTNEVQ
CEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCEEEEEEECCCHHH
AKEAAAAGVARFGRIDVLANNAGYGLLGAVEEATADEIEKLYATNVFGLLKVTRAVLPYL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQRSGHVLNFSSIGGYFGYPGWGVYGSTKFAVEGLSESMAAELEPFGIKVTIVEPGFFR
HHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
TDFLADTSLAVSPASIADYEGTPAGNMRNFPADANHAQPGNPAKLAAGIMTMVNSANPPL
HHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
RMPFGSDTVAMIEAQHASVEKELAGWRELAVSTDFPSDATASA
ECCCCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]