Click here to switch to the map view.

The map label for this gene is rplU [H]

Identifier: 209548869

GI number: 209548869

Start: 1282438

End: 1283106

Strand: Direct

Name: rplU [H]

Synonym: Rleg2_1266

Alternate gene names: 209548869

Gene position: 1282438-1283106 (Clockwise)

Preceding gene: 209548868

Following gene: 209548870

Centisome position: 28.26

GC content: 65.92

Gene sequence:

>669_bases
ATGGCGGACAACGCATCGAAGAGTGGAAAGAAGGAAGACGCCGCCGATTTCGCGGCCGGCTTCGGCCGTCTTGCCGCCGA
GATGCTGGAAAATGCACGGGCAATGCCCGTGCATCCGCTGATGGCGCATCCGGCCGCTGCCTTTGCCGCTGCAACGGCGA
TCGGCTTCGGCCTCTCGACGCAGATGGCGGGCGCCTTCTTCGGCGCCTTCCAGAGCGCGCTGGAAACGACCGGCAAGGTC
GCTGCCGCCCTCGATGATACGCCGCCGGACGAGCTGGCGCCCGACGTCGAGATCCGGCCGGAGAATATTCGCCCTGCCGT
CAAGGTTGTCGCCAAGCCGGCGGTCGCGAAGAGGGCAGGGCCGAAATTGACGGTTGTCAGGCCGGTCAGCGAACCGGTGC
CGGCAAGCCAGCCGAAGCCGGCTGTGAAGGCAAAACCGGTCGCGCGGGCAAAAAAGGCCGACGATCTGAAGCTGATCGCC
GGCGTCGGTCCGAAGTTGGAGCAGGTGCTGAACGCCAAGGGCATTCGCAGTTTTGCCGAAATCGCCGCCTGGAGCGATGA
GGACATCGCCCGGCTCGACGCCGAGCTTGGCTTCAACGGCCGCATCGGGCGTGACGACTGGAGCGGCCAGGCGAAAGTTC
TGGCCGGGCGGGGCCGTAGGAAGAAATGA

Upstream 100 bases:

>100_bases
GTCTGATCCGTAACTTCCGTCCCGAGATCGAAAAGCGCATCGACCAGTATACGGCAAGCGCGCTCGATCACGGTGCGGTT
CTGGAGGCGGCTGAATAATC

Downstream 100 bases:

>100_bases
ACTGTCCGGCCGTGCAATCGGCCGGAAAGATGGGTAGATCGGCGGACGGGTGGGGGCCTCACGCTGCAGAAGCCGATGCG
GGTTCCGGACCTGGGACACG

Product: hypothetical protein

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MADNASKSGKKEDAADFAAGFGRLAAEMLENARAMPVHPLMAHPAAAFAAATAIGFGLSTQMAGAFFGAFQSALETTGKV
AAALDDTPPDELAPDVEIRPENIRPAVKVVAKPAVAKRAGPKLTVVRPVSEPVPASQPKPAVKAKPVARAKKADDLKLIA
GVGPKLEQVLNAKGIRSFAEIAAWSDEDIARLDAELGFNGRIGRDDWSGQAKVLAGRGRRKK

Sequences:

>Translated_222_residues
MADNASKSGKKEDAADFAAGFGRLAAEMLENARAMPVHPLMAHPAAAFAAATAIGFGLSTQMAGAFFGAFQSALETTGKV
AAALDDTPPDELAPDVEIRPENIRPAVKVVAKPAVAKRAGPKLTVVRPVSEPVPASQPKPAVKAKPVARAKKADDLKLIA
GVGPKLEQVLNAKGIRSFAEIAAWSDEDIARLDAELGFNGRIGRDDWSGQAKVLAGRGRRKK
>Mature_221_residues
ADNASKSGKKEDAADFAAGFGRLAAEMLENARAMPVHPLMAHPAAAFAAATAIGFGLSTQMAGAFFGAFQSALETTGKVA
AALDDTPPDELAPDVEIRPENIRPAVKVVAKPAVAKRAGPKLTVVRPVSEPVPASQPKPAVKAKPVARAKKADDLKLIAG
VGPKLEQVLNAKGIRSFAEIAAWSDEDIARLDAELGFNGRIGRDDWSGQAKVLAGRGRRKK

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: 1.6.5.3

Molecular weight: Translated: 23166; Mature: 23035

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNASKSGKKEDAADFAAGFGRLAAEMLENARAMPVHPLMAHPAAAFAAATAIGFGLST
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCHHH
QMAGAFFGAFQSALETTGKVAAALDDTPPDELAPDVEIRPENIRPAVKVVAKPAVAKRAG
HHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCC
PKLTVVRPVSEPVPASQPKPAVKAKPVARAKKADDLKLIAGVGPKLEQVLNAKGIRSFAE
CCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
IAAWSDEDIARLDAELGFNGRIGRDDWSGQAKVLAGRGRRKK
HHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
ADNASKSGKKEDAADFAAGFGRLAAEMLENARAMPVHPLMAHPAAAFAAATAIGFGLST
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCHHH
QMAGAFFGAFQSALETTGKVAAALDDTPPDELAPDVEIRPENIRPAVKVVAKPAVAKRAG
HHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCC
PKLTVVRPVSEPVPASQPKPAVKAKPVARAKKADDLKLIAGVGPKLEQVLNAKGIRSFAE
CCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
IAAWSDEDIARLDAELGFNGRIGRDDWSGQAKVLAGRGRRKK
HHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA