Click here to switch to the map view.

The map label for this gene is ycbB [H]

Identifier: 209548779

GI number: 209548779

Start: 1187040

End: 1188341

Strand: Direct

Name: ycbB [H]

Synonym: Rleg2_1176

Alternate gene names: 209548779

Gene position: 1187040-1188341 (Clockwise)

Preceding gene: 209548774

Following gene: 209548780

Centisome position: 26.16

GC content: 63.29

Gene sequence:

>1302_bases
ATGTCGAAGAAAAACGGAAATGAAGCTCTCTCGCGCCGCGCTTTCCTTGCGTCCGCGGCAACGGTTGGCGTAAGCGCGAT
TGCTGCGCCGGCCTTCGCGCAATCGGCGATCGATACGCTGATCAATGCGCCGCGCCGCGGCAACTGGGACGACCAGTTCG
ATGCCAAGGCGGCTTCGCGCACGGCAAGCGCCGTCGTTTCCAACACGCCGATCCTTGGTCCCCAATCGCTCGCCAGCGCC
CAGCAGGCGGTCATGCAGTATCAGCAGATCGCCGCTGCCGGCGGCTGGCCGGAGGTCAATCCCGGTGACCAGAAGCTGCA
GCTCGGCGTCAGCCATCCCGCAGTCCAGGCGCTGCGCCAGCGCCTGGCGATCACCGGCGACCTGCCGCGCGAGGCCGGCA
TGTCGAGTGCCTTCGACTCCTATGTCGACGGCGCCGTCAAGCGCTTCCAGGCCCGCCACGGCCTGCCGTCCGACGGTGTC
CTCGGCGAATTCACGCTGAAGGCGATGAACATCCCCGCCGATGTCCGCCTGCAGCAGCTGAACACCAATATCATTCGCCT
GCAGACGTTCCCCGAGGATCTCGGCCGCCGCCACGTGATGGTCAACATCCCGGCTGCCTATGTCGAGGCTGTCGAGGATG
GCACTGTCGCGACGCGCCACACCGCGGTTGTCGGCCGTCTCAGCCGTCCGACACATCTCGTCAATTCGAAGATCTACGAG
GTCATCCTCAACCCCTACTGGACCTCGCCGCGCTCGATCGTCGAGAAGGACATCATGCCGCTGATGCGCAAGGATCCGAC
CTATCTCGAAAAGAACGCCATCCGCCTGATTGACGGCAAGGGCAACGAAGTCGCGCCCGAGACAATCGACTGGAACGGCG
AGGCGCCGAACCTGATGTTCCGCCAGGACCCTGGCAAGACCAACGCCATGGCGTCGACGAAGATCAATTTCTACAACAAG
AACGGCGAGTACATGCACGACACGCCGCAGCAGGGCCTGTTCAACAAGCTGATGCGCTTCGAATCCTCTGGCTGCGTCCG
CGTCCAGAACGTGCGCGACTTGTCGAACTGGCTCTTGCGCGAGACCCCCGGCTGGAACCGCCAGCAGATGGAGCAGGTGA
TCGCATCCGGCGTCAACACGCCGGTCAAACTCGCCACGGAAGTTCCGGTCTATTTCGTCTACATCTCCGCCTGGGGCATG
CCGGACGGCATCGTCCAGTTCCGCGACGACATCTATCAGATGGACGGTAATGCCGAGCTGGCGCTCGATACCACGGCCGG
CATGGAACAGCCGGTCCAATAA

Upstream 100 bases:

>100_bases
ATCTGCCGGGACAACAAATGCACAGAGATCTGCGTTAAAGCGCAGTGTTATCGCAAAGAGCCGCGGCTTCTCTTTATCGC
CGCATTCAGTGGTTGGGACT

Downstream 100 bases:

>100_bases
ACGGCGGCCTCTGCATCGCATCTTCAAACCGCGCCTTCCGGGCGCGGTTTTTTTATGCCGGGGAGGGCACTCGGCGACGT
GATGGCCGGTCCTTAGCGTT

Product: peptidoglycan-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MSKKNGNEALSRRAFLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSLASA
QQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGV
LGEFTLKAMNIPADVRLQQLNTNIIRLQTFPEDLGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYE
VILNPYWTSPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNGEAPNLMFRQDPGKTNAMASTKINFYNK
NGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIASGVNTPVKLATEVPVYFVYISAWGM
PDGIVQFRDDIYQMDGNAELALDTTAGMEQPVQ

Sequences:

>Translated_433_residues
MSKKNGNEALSRRAFLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSLASA
QQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGV
LGEFTLKAMNIPADVRLQQLNTNIIRLQTFPEDLGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYE
VILNPYWTSPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNGEAPNLMFRQDPGKTNAMASTKINFYNK
NGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIASGVNTPVKLATEVPVYFVYISAWGM
PDGIVQFRDDIYQMDGNAELALDTTAGMEQPVQ
>Mature_432_residues
SKKNGNEALSRRAFLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSLASAQ
QAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVL
GEFTLKAMNIPADVRLQQLNTNIIRLQTFPEDLGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYEV
ILNPYWTSPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNGEAPNLMFRQDPGKTNAMASTKINFYNKN
GEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIASGVNTPVKLATEVPVYFVYISAWGMP
DGIVQFRDDIYQMDGNAELALDTTAGMEQPVQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=300, Percent_Identity=36, Blast_Score=179, Evalue=4e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 47595; Mature: 47463

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNGNEALSRRAFLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
TASAVVSNTPILGPQSLASAQQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHH
RLAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQL
HHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHCC
NTNIIRLQTFPEDLGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYE
CCCEEEEEECCHHHCCCEEEEECCHHHHHHHCCCCCEEHHHHHHHCCCCCHHHHHHHHHH
VILNPYWTSPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNGEAPNLMF
HHHCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
RQDPGKTNAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLR
ECCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH
ETPGWNRQQMEQVIASGVNTPVKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDGNAEL
CCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEE
ALDTTAGMEQPVQ
EEECCCCCCCCCC
>Mature Secondary Structure 
SKKNGNEALSRRAFLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
TASAVVSNTPILGPQSLASAQQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHH
RLAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQL
HHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHCC
NTNIIRLQTFPEDLGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYE
CCCEEEEEECCHHHCCCEEEEECCHHHHHHHCCCCCEEHHHHHHHCCCCCHHHHHHHHHH
VILNPYWTSPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNGEAPNLMF
HHHCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
RQDPGKTNAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLR
ECCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH
ETPGWNRQQMEQVIASGVNTPVKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDGNAEL
CCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEE
ALDTTAGMEQPVQ
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]