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The map label for this gene is ycjD [H]

Identifier: 209548640

GI number: 209548640

Start: 1055756

End: 1056124

Strand: Reverse

Name: ycjD [H]

Synonym: Rleg2_1037

Alternate gene names: 209548640

Gene position: 1056124-1055756 (Counterclockwise)

Preceding gene: 209548641

Following gene: 209548639

Centisome position: 23.27

GC content: 56.64

Gene sequence:

>369_bases
ATGCCGCATGCACCAGTTCCGCCTCAACGGCGGGCGAACGCCCGGCGTATGCGCAAAACTCTGACCGACGCAGAATTGAA
ACTCTGGAACGAGTTTCGCGCCCATCGCCTGATGGGCCTGAGCTTCCGCAGACAAATGCCGATTGCCGGCTATATCGTTG
ACTTCGCATGCCCAGTCCATCGCCTTATCGTCGAGATAGACGGTTCGCAGCACGCCCTTGCCTCGAACATCTCTTACGAT
GAGATCAGAACTCGACGTCTCCAAACGGCTGGCTGGACGGTTCTGCGCTTTTGGAACGGCGATATCCTCCGGGATATCGA
TAATGTGTGCACCCATATCATTCGCACCACCGGAAAGGACCTGCCATGA

Upstream 100 bases:

>100_bases
CGGCCACTCCTATCCGATCTCCCCTCTTGTGGGGGAGATGCCCGGCAGGGCAGAGGGGGGTGCCGCCGCCGCTCCGTCAC
GTCATAGCGAAAGGCAAGCC

Downstream 100 bases:

>100_bases
CCACCTATACCGGCGGCTGCCAGTGTGGTGCGGTGCGTTTTCGCGTCAATGGCGAACTCAAGGATTCGTCGATCTGCCAT
TGCCGCATGTGCCAGAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MPHAPVPPQRRANARRMRKTLTDAELKLWNEFRAHRLMGLSFRRQMPIAGYIVDFACPVHRLIVEIDGSQHALASNISYD
EIRTRRLQTAGWTVLRFWNGDILRDIDNVCTHIIRTTGKDLP

Sequences:

>Translated_122_residues
MPHAPVPPQRRANARRMRKTLTDAELKLWNEFRAHRLMGLSFRRQMPIAGYIVDFACPVHRLIVEIDGSQHALASNISYD
EIRTRRLQTAGWTVLRFWNGDILRDIDNVCTHIIRTTGKDLP
>Mature_121_residues
PHAPVPPQRRANARRMRKTLTDAELKLWNEFRAHRLMGLSFRRQMPIAGYIVDFACPVHRLIVEIDGSQHALASNISYDE
IRTRRLQTAGWTVLRFWNGDILRDIDNVCTHIIRTTGKDLP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=44.6428571428571, Blast_Score=103, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14174; Mature: 14042

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHAPVPPQRRANARRMRKTLTDAELKLWNEFRAHRLMGLSFRRQMPIAGYIVDFACPVH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
RLIVEIDGSQHALASNISYDEIRTRRLQTAGWTVLRFWNGDILRDIDNVCTHIIRTTGKD
HHHEEECCCCHHHHHCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCC
LP
CC
>Mature Secondary Structure 
PHAPVPPQRRANARRMRKTLTDAELKLWNEFRAHRLMGLSFRRQMPIAGYIVDFACPVH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
RLIVEIDGSQHALASNISYDEIRTRRLQTAGWTVLRFWNGDILRDIDNVCTHIIRTTGKD
HHHEEECCCCHHHHHCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCC
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]