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The map label for this gene is sodC2 [H]

Identifier: 209548612

GI number: 209548612

Start: 1031704

End: 1032219

Strand: Direct

Name: sodC2 [H]

Synonym: Rleg2_1009

Alternate gene names: 209548612

Gene position: 1031704-1032219 (Clockwise)

Preceding gene: 209548611

Following gene: 209548621

Centisome position: 22.74

GC content: 64.15

Gene sequence:

>516_bases
ATGAAAGCCATGTGCACCATCGCCGCCCTGAGCCTGCTTGCCGTTGCATTGCCGGCGGGTGCCCAGGACCAGCAGACGGC
GGTCGCCAATTTCGTCGGCAAGGACGGCAAGGAGGACGGCCGCGCGCAGCTGACGGCTGCCGCCACCGGCGGTGTCTTGA
TCGAAGTCGAGATATCGGGACTGCCGGCGAACAAATGGGTGGCCTTCCATGTTCATGAGACCGGCCGATGCGACGCCGCG
ACCCATCACGAGTCGGCCGGCGGTCACTTCAACCCTGCGAAGGCCGAGCATGGCATCCTTGCCGCCAAGGGGCCGCACGC
CGGCGATATGCCCAATCAATATGTCGGGCAGGACGGCGTGCTCAGGGCGCAGGTCTTCGACAGCATGGTCACGCTCGATG
GCAAGACCGATGGCATTCGCGGCCGCGCATTGATGGTGCACGCCAATTCGGATGACTATCGCAGCCAGCCTTCGGGTGAT
GCCGGGGAGAGATTGTCCTGCGGCGTCATTCAATAG

Upstream 100 bases:

>100_bases
GCCTGCCTCAGCGCCTCCTGTCGGATACGCGGCGCTCTAAATGAGGAACACCTTCCGGGTTGATACGTTCAGAAGGACAA
CCGGACGGAAGGAGATCTCT

Downstream 100 bases:

>100_bases
TCTGCTGCATTAGTTCCTGGATCACTGTCTCAGTGCCGGCTTTTCGGCGGCCGACCTGCCGTTGGACGTCTTTGCCGGCG
CGGCGTTCGGTGCATCCGGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKAMCTIAALSLLAVALPAGAQDQQTAVANFVGKDGKEDGRAQLTAAATGGVLIEVEISGLPANKWVAFHVHETGRCDAA
THHESAGGHFNPAKAEHGILAAKGPHAGDMPNQYVGQDGVLRAQVFDSMVTLDGKTDGIRGRALMVHANSDDYRSQPSGD
AGERLSCGVIQ

Sequences:

>Translated_171_residues
MKAMCTIAALSLLAVALPAGAQDQQTAVANFVGKDGKEDGRAQLTAAATGGVLIEVEISGLPANKWVAFHVHETGRCDAA
THHESAGGHFNPAKAEHGILAAKGPHAGDMPNQYVGQDGVLRAQVFDSMVTLDGKTDGIRGRALMVHANSDDYRSQPSGD
AGERLSCGVIQ
>Mature_171_residues
MKAMCTIAALSLLAVALPAGAQDQQTAVANFVGKDGKEDGRAQLTAAATGGVLIEVEISGLPANKWVAFHVHETGRCDAA
THHESAGGHFNPAKAEHGILAAKGPHAGDMPNQYVGQDGVLRAQVFDSMVTLDGKTDGIRGRALMVHANSDDYRSQPSGD
AGERLSCGVIQ

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=108, Percent_Identity=41.6666666666667, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787934, Length=179, Percent_Identity=32.9608938547486, Blast_Score=67, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=127, Percent_Identity=39.3700787401575, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71981879, Length=127, Percent_Identity=39.3700787401575, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17554806, Length=120, Percent_Identity=38.3333333333333, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17537871, Length=111, Percent_Identity=37.8378378378378, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322564, Length=123, Percent_Identity=39.0243902439024, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17136496, Length=143, Percent_Identity=37.0629370629371, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85725006, Length=125, Percent_Identity=36.8, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45551081, Length=125, Percent_Identity=36.8, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24652737, Length=125, Percent_Identity=36.8, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007680, Length=125, Percent_Identity=36.8, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17712; Mature: 17712

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAMCTIAALSLLAVALPAGAQDQQTAVANFVGKDGKEDGRAQLTAAATGGVLIEVEISG
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEECC
LPANKWVAFHVHETGRCDAATHHESAGGHFNPAKAEHGILAAKGPHAGDMPNQYVGQDGV
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCE
LRAQVFDSMVTLDGKTDGIRGRALMVHANSDDYRSQPSGDAGERLSCGVIQ
EHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKAMCTIAALSLLAVALPAGAQDQQTAVANFVGKDGKEDGRAQLTAAATGGVLIEVEISG
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEECC
LPANKWVAFHVHETGRCDAATHHESAGGHFNPAKAEHGILAAKGPHAGDMPNQYVGQDGV
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCE
LRAQVFDSMVTLDGKTDGIRGRALMVHANSDDYRSQPSGDAGERLSCGVIQ
EHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]