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The map label for this gene is ydiF [H]

Identifier: 209548425

GI number: 209548425

Start: 838292

End: 839887

Strand: Reverse

Name: ydiF [H]

Synonym: Rleg2_0822

Alternate gene names: 209548425

Gene position: 839887-838292 (Counterclockwise)

Preceding gene: 209548426

Following gene: 209548424

Centisome position: 18.51

GC content: 65.98

Gene sequence:

>1596_bases
ATGCCTGCATCCATCACTCTATCCAAAATTTCATGGGCCACGCCTGACGGGCGGCCGCTTTTTTCCGGTCTCGATTTGAG
TTTCGGGGCGGAGCGTATCGGTCTGGTCGGGCGCAACGGCGTCGGCAAGACGACGCTGCTGAAGCTCGTTTCAGGTGACG
CCAAGCCGCACTCGGGAACGGTATCGGTCGGCGGCAGCCTCGGCATCCTGCGCCAGAACGTGCAGGTGGCATTTCACGAA
ACCATCGCCGATCTCTTCGGCGTCGCCGGGGCGCTTACGGTTCTCCGCCGCGCCGAAACCGGCGACGCAACGGCCGACGA
GCTCGCCTCGGCCGACTGGACGCTGGAGGCGCGCATCGCAGTTGCGCTCAATCGAACAGGGCTCGACGCACAGCCGGAAA
CGCCGCTCGCCGAACTTTCCGGCGGGCAGCGCACCCGGGCCGGACTTGCCGCGCTTGTTTTCACCGAACCGGATTTTCTG
CTGCTCGACGAACCCACCAACAATCTCGACCGCGACGGCCGCGAGGCGGTGATCGCGCTGCTATCGGGCTGGCGAGCCGG
GGCGATCATCGTCAGCCATGACCGGGAATTGCTCGAAAGCATGGATGCGATCGTCGAACTGACATCGCTCGGCGCGACGC
GCTACGGCGGCAATTGGAGCCATTATCGCCAGCGCAAGGCGCTTGAGCTTGCGGCGGCAGAGCACGATCTCGCCGATGCG
GAAAAACGCATGGCCGAGGTCGCCAGGAAGGCACAGGCGACGGTGGAGCGCCAGGCGCAAAGGGACAGCACGGGGCGGAA
GATGGCCGCCAAGGGCGGCATCCCGCGCATCATGCTCGGCGGCATGAAGGAGCGCAGCGAAACGACCGGCGGCGACAATG
CCCGCCTTGCCGAACGCCGGCGCACCCAGGCGCTGGACGAGGCGAAGGCCGCGCGCGAAAAAATCGAGATCCTGCAGCCC
TTGTCGGTGACCTTGCCGCCGACCGGACTGGCGGCCGGCAAGATCGTGCTGCGGGTGGATCGTATGACATCGGGCTATCG
GCCGGGTGACCCCGTCATCGGCGATCTCTCCTTCGACGTGACGGGGCCGGAACGCATTGCCGTCACCGGCCGCAACGGCT
CGGGCAAGACGACGCTGCTTTCGCTCATCACCGGCGAAATCAAACCCTGGGCCGGCACGATCGCCGTGATGACCGACTTC
GCGATGCTCGATCAGAAGGTCAGCCTTCTCGATCCGTTGGCCTCGATCCGCGACAATTTTCGCCGGATCAATCCGCTTTC
CGATGAGAACACCTGCCGGGCCGCGCTTGCCCGCTTCATGTTCCGGGCGGACGCGGCGCTGCAGACCGTCTCGACGCTCA
GCGGCGGGCAACTGCTGCGCGCCGGCCTCGCCTGCGTTCTCGGCGCCACACCACCGCCGCTGCTGATCCTCGACGAGCCG
ACCAACCACCTCGACATCGACTCGATATCCGCGGTCGAGGCGGGCCTCAGCGCCTATGACGGGGCGCTCATCGTCGTCAG
CCATGACGAGACGTTTCTGGAAAGCATCGGGATCACGCGGCGGCTGGAATTGGCTGGCGGTGATCCGGCGGGTTAG

Upstream 100 bases:

>100_bases
AAATTACCTGCCATCGACCATTTCAACAGGATGTGTGCCGCAATGGATTTCAACCCGATCGCAATGCCAGTTCGCCTTGC
CAACGGGGAAATCCATATCC

Downstream 100 bases:

>100_bases
GCGGCACTCATTGAGGCACGCAGCCCATAGGGCGGAGCCTCGAGGGACGCGTCCAGCACCGCGTCTTGCGCCCATCAACG
CCGGTGGCCGACCTCGTCCT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MPASITLSKISWATPDGRPLFSGLDLSFGAERIGLVGRNGVGKTTLLKLVSGDAKPHSGTVSVGGSLGILRQNVQVAFHE
TIADLFGVAGALTVLRRAETGDATADELASADWTLEARIAVALNRTGLDAQPETPLAELSGGQRTRAGLAALVFTEPDFL
LLDEPTNNLDRDGREAVIALLSGWRAGAIIVSHDRELLESMDAIVELTSLGATRYGGNWSHYRQRKALELAAAEHDLADA
EKRMAEVARKAQATVERQAQRDSTGRKMAAKGGIPRIMLGGMKERSETTGGDNARLAERRRTQALDEAKAAREKIEILQP
LSVTLPPTGLAAGKIVLRVDRMTSGYRPGDPVIGDLSFDVTGPERIAVTGRNGSGKTTLLSLITGEIKPWAGTIAVMTDF
AMLDQKVSLLDPLASIRDNFRRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACVLGATPPPLLILDEP
TNHLDIDSISAVEAGLSAYDGALIVVSHDETFLESIGITRRLELAGGDPAG

Sequences:

>Translated_531_residues
MPASITLSKISWATPDGRPLFSGLDLSFGAERIGLVGRNGVGKTTLLKLVSGDAKPHSGTVSVGGSLGILRQNVQVAFHE
TIADLFGVAGALTVLRRAETGDATADELASADWTLEARIAVALNRTGLDAQPETPLAELSGGQRTRAGLAALVFTEPDFL
LLDEPTNNLDRDGREAVIALLSGWRAGAIIVSHDRELLESMDAIVELTSLGATRYGGNWSHYRQRKALELAAAEHDLADA
EKRMAEVARKAQATVERQAQRDSTGRKMAAKGGIPRIMLGGMKERSETTGGDNARLAERRRTQALDEAKAAREKIEILQP
LSVTLPPTGLAAGKIVLRVDRMTSGYRPGDPVIGDLSFDVTGPERIAVTGRNGSGKTTLLSLITGEIKPWAGTIAVMTDF
AMLDQKVSLLDPLASIRDNFRRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACVLGATPPPLLILDEP
TNHLDIDSISAVEAGLSAYDGALIVVSHDETFLESIGITRRLELAGGDPAG
>Mature_530_residues
PASITLSKISWATPDGRPLFSGLDLSFGAERIGLVGRNGVGKTTLLKLVSGDAKPHSGTVSVGGSLGILRQNVQVAFHET
IADLFGVAGALTVLRRAETGDATADELASADWTLEARIAVALNRTGLDAQPETPLAELSGGQRTRAGLAALVFTEPDFLL
LDEPTNNLDRDGREAVIALLSGWRAGAIIVSHDRELLESMDAIVELTSLGATRYGGNWSHYRQRKALELAAAEHDLADAE
KRMAEVARKAQATVERQAQRDSTGRKMAAKGGIPRIMLGGMKERSETTGGDNARLAERRRTQALDEAKAAREKIEILQPL
SVTLPPTGLAAGKIVLRVDRMTSGYRPGDPVIGDLSFDVTGPERIAVTGRNGSGKTTLLSLITGEIKPWAGTIAVMTDFA
MLDQKVSLLDPLASIRDNFRRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACVLGATPPPLLILDEPT
NHLDIDSISAVEAGLSAYDGALIVVSHDETFLESIGITRRLELAGGDPAG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=526, Percent_Identity=28.7072243346008, Blast_Score=156, Evalue=5e-38,
Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=29.9082568807339, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=29.9082568807339, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=26.8876611418048, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=26.8876611418048, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI105990541, Length=199, Percent_Identity=29.6482412060301, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI27477115, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI6005701, Length=233, Percent_Identity=27.4678111587983, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=30.8550185873606, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1789751, Length=511, Percent_Identity=28.7671232876712, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1787182, Length=536, Percent_Identity=28.544776119403, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI2367384, Length=551, Percent_Identity=29.038112522686, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI87081782, Length=574, Percent_Identity=25.609756097561, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788761, Length=188, Percent_Identity=30.8510638297872, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=185, Percent_Identity=30.8108108108108, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=29.6482412060301, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787758, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788506, Length=201, Percent_Identity=30.3482587064677, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786253, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=28.643216080402, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1788165, Length=203, Percent_Identity=29.064039408867, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553372, Length=543, Percent_Identity=30.0184162062615, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17559834, Length=525, Percent_Identity=28.952380952381, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17555318, Length=517, Percent_Identity=25.9187620889749, Blast_Score=131, Evalue=9e-31,
Organism=Saccharomyces cerevisiae, GI6320874, Length=521, Percent_Identity=27.2552783109405, Blast_Score=147, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6321121, Length=548, Percent_Identity=25.9124087591241, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6325030, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24666836, Length=533, Percent_Identity=30.2063789868668, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24641342, Length=537, Percent_Identity=29.2364990689013, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24642252, Length=516, Percent_Identity=26.3565891472868, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI18859989, Length=516, Percent_Identity=26.3565891472868, Blast_Score=136, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 56341; Mature: 56210

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASITLSKISWATPDGRPLFSGLDLSFGAERIGLVGRNGVGKTTLLKLVSGDAKPHSGT
CCCCEEEEEEEECCCCCCCEECCCCCCCCHHHHCEECCCCCCHHHHHHHHCCCCCCCCCE
VSVGGSLGILRQNVQVAFHETIADLFGVAGALTVLRRAETGDATADELASADWTLEARIA
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEE
VALNRTGLDAQPETPLAELSGGQRTRAGLAALVFTEPDFLLLDEPTNNLDRDGREAVIAL
EEEECCCCCCCCCCCHHHCCCCCCHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHH
LSGWRAGAIIVSHDRELLESMDAIVELTSLGATRYGGNWSHYRQRKALELAAAEHDLADA
HHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EKRMAEVARKAQATVERQAQRDSTGRKMAAKGGIPRIMLGGMKERSETTGGDNARLAERR
HHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCCEEEECCCHHHCCCCCCCCHHHHHHH
RTQALDEAKAAREKIEILQPLSVTLPPTGLAAGKIVLRVDRMTSGYRPGDPVIGDLSFDV
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEC
TGPERIAVTGRNGSGKTTLLSLITGEIKPWAGTIAVMTDFAMLDQKVSLLDPLASIRDNF
CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACVLGATPPPLLILDEP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCC
TNHLDIDSISAVEAGLSAYDGALIVVSHDETFLESIGITRRLELAGGDPAG
CCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure 
PASITLSKISWATPDGRPLFSGLDLSFGAERIGLVGRNGVGKTTLLKLVSGDAKPHSGT
CCCEEEEEEEECCCCCCCEECCCCCCCCHHHHCEECCCCCCHHHHHHHHCCCCCCCCCE
VSVGGSLGILRQNVQVAFHETIADLFGVAGALTVLRRAETGDATADELASADWTLEARIA
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEE
VALNRTGLDAQPETPLAELSGGQRTRAGLAALVFTEPDFLLLDEPTNNLDRDGREAVIAL
EEEECCCCCCCCCCCHHHCCCCCCHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHH
LSGWRAGAIIVSHDRELLESMDAIVELTSLGATRYGGNWSHYRQRKALELAAAEHDLADA
HHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EKRMAEVARKAQATVERQAQRDSTGRKMAAKGGIPRIMLGGMKERSETTGGDNARLAERR
HHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCCEEEECCCHHHCCCCCCCCHHHHHHH
RTQALDEAKAAREKIEILQPLSVTLPPTGLAAGKIVLRVDRMTSGYRPGDPVIGDLSFDV
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEC
TGPERIAVTGRNGSGKTTLLSLITGEIKPWAGTIAVMTDFAMLDQKVSLLDPLASIRDNF
CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRINPLSDENTCRAALARFMFRADAALQTVSTLSGGQLLRAGLACVLGATPPPLLILDEP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCC
TNHLDIDSISAVEAGLSAYDGALIVVSHDETFLESIGITRRLELAGGDPAG
CCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]