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The map label for this gene is ybaO [C]

Identifier: 209548237

GI number: 209548237

Start: 653991

End: 654473

Strand: Direct

Name: ybaO [C]

Synonym: Rleg2_0631

Alternate gene names: 209548237

Gene position: 653991-654473 (Clockwise)

Preceding gene: 209548230

Following gene: 209548242

Centisome position: 14.41

GC content: 59.42

Gene sequence:

>483_bases
TTGAGCCAGCCGCTAAAATCTCCCTTGGATGCTTTCGATCACAAAATCCTGGCGATGCTGCAAAGGGACAATATGACGCC
GCAACGCACGATCGGCGAAGCCGTCGGCCTGTCTGCGCCGGCCGTCCAACGCCGGATCAAACGGATGACCGAGGATGGGG
TGATCCGGGCAAACGTCGCCGTTCTCGACCCCGCAGCCCTTGGGCAATCGATCACCATCTTCGTCGAGGTGGAGGTCATC
AGCGAAACGGCAAAACAGATCGAACAGGCAAAAAGCCAGTTCGCCGCCGCGCCTGAAATCCAGCAGTGCTACTACGTCAC
CGGAGAGGCGGATTTCATCCTCGTCATCGTCGTCCCCTCGATGGCCGACTACGAGGCACTGACGCGGCGGCTGTTTTTCG
GCAATAACAACGTCAAGCGCTTCCGCACATTCGTCGCGATGGATCGGGTGAAGGTGGGCTTAAGCGTCCCCGTCGAGCGC
TGA

Upstream 100 bases:

>100_bases
CCTCGTTTCAATTGTTCGGCTAAAACATATTGCAGGCGAAGTGAAAAAGGCGCTGTATTTCGGCCCTAGTTTTGCAATTT
TGTTTCGTTGGAGCCCCGTT

Downstream 100 bases:

>100_bases
GACCGGTGACTCAGGCCGCTTGGTCAGCGGAAAGCGCTCCCGGACGTTCAGACGAATCGGCGACCAATAGAGGTTCCGTA
CGCTACCTCAATCAATTCGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSQPLKSPLDAFDHKILAMLQRDNMTPQRTIGEAVGLSAPAVQRRIKRMTEDGVIRANVAVLDPAALGQSITIFVEVEVI
SETAKQIEQAKSQFAAAPEIQQCYYVTGEADFILVIVVPSMADYEALTRRLFFGNNNVKRFRTFVAMDRVKVGLSVPVER

Sequences:

>Translated_160_residues
MSQPLKSPLDAFDHKILAMLQRDNMTPQRTIGEAVGLSAPAVQRRIKRMTEDGVIRANVAVLDPAALGQSITIFVEVEVI
SETAKQIEQAKSQFAAAPEIQQCYYVTGEADFILVIVVPSMADYEALTRRLFFGNNNVKRFRTFVAMDRVKVGLSVPVER
>Mature_159_residues
SQPLKSPLDAFDHKILAMLQRDNMTPQRTIGEAVGLSAPAVQRRIKRMTEDGVIRANVAVLDPAALGQSITIFVEVEVIS
ETAKQIEQAKSQFAAAPEIQQCYYVTGEADFILVIVVPSMADYEALTRRLFFGNNNVKRFRTFVAMDRVKVGLSVPVER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=28.476821192053, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=32.1678321678322, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17783; Mature: 17652

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPLKSPLDAFDHKILAMLQRDNMTPQRTIGEAVGLSAPAVQRRIKRMTEDGVIRANVA
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEE
VLDPAALGQSITIFVEVEVISETAKQIEQAKSQFAAAPEIQQCYYVTGEADFILVIVVPS
EECHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCEEEEEEECC
MADYEALTRRLFFGNNNVKRFRTFVAMDRVKVGLSVPVER
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQPLKSPLDAFDHKILAMLQRDNMTPQRTIGEAVGLSAPAVQRRIKRMTEDGVIRANVA
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEE
VLDPAALGQSITIFVEVEVISETAKQIEQAKSQFAAAPEIQQCYYVTGEADFILVIVVPS
EECHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCEEEEEEECC
MADYEALTRRLFFGNNNVKRFRTFVAMDRVKVGLSVPVER
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]