| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is linX [H]
Identifier: 209548174
GI number: 209548174
Start: 593031
End: 593798
Strand: Reverse
Name: linX [H]
Synonym: Rleg2_0568
Alternate gene names: 209548174
Gene position: 593798-593031 (Counterclockwise)
Preceding gene: 209548175
Following gene: 209548172
Centisome position: 13.09
GC content: 66.02
Gene sequence:
>768_bases ATGACGGACAGATTGAAGGGCAAGGTCGCCATCATCTCGGGCGGCGCGACCGGCATGGGCGGTGCTGCCTCGAAGCTCTT TGCGGCGGAAGGCGCGCGTGTCGCGATCATCGACCGCAACGGCCAGGCGGCTGATGAGACCGTCAAGCAGATCCGTGATG CCGGCGGCGAAGCCGACTGCTGGACGGCCGATGTCTCCGACGAAGCGGCGGTCAATTCAGCCGTCGCCGGCGTCGAGGAC CGTTATGGCGCCGTCACCGTGCTCTTCAACCACGCCGGCACGATCGTCATCAAACCCTTCCTGGAAACCACGCTTCAGGA ATGGGACTGGCTGCACGCCGTCAATGTGCGCTCGATGTTCCTGATGACCAAGGCCGTGCTGCCGAAGATGATTGCCGCGG GCGGCGGTTCGATCGTCTGCACCTCGTCGATCTCGGCGGTCGCCGCCACGCCGATGGAAGTGCTTTACGACACGACCAAG GGCGCCGTGCACATGTTTGCCCGCGCCATCGCCGTGGAATTTCGCGACCGCAACATCCGCTGCAATGCCGTCTGCCCCGG CTTCATCCGCACGCCGCACGGCCTGCGCGAGGTGGCCGACCTGCAGGCGCTCGGCGTCGACGTTTCGGACGCCGCCATCG CCGCCCAGCAGGGGCGGATCGGCGAGCCCGAGGATGTGGCGCGGGCCGCCCTTTACCTCGCCAGCGACGAGTCGAACTTC GTCAACGGCGCCCATCTCTTCGTCGACAACGGTTTTACGGCGATCTGA
Upstream 100 bases:
>100_bases ACATGTTTGAAAACAAGTCGCTAAAGCTGCCTTTTGGCGCTTGGCGATCGGCTCGCCACCGATCTATGATCCCCTTCCAA TATCATGAGGGGTCAGAAAA
Downstream 100 bases:
>100_bases AACAAGCGCAGCGGTACCCGCCGTCCGGAAAGTCTGCCTCACTCATCAGCGATCTCGGCTCAGAGGCAGACTGCCGGCCA AACGCGTCACTGCGTCGCGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAADETVKQIRDAGGEADCWTADVSDEAAVNSAVAGVED RYGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMFLMTKAVLPKMIAAGGGSIVCTSSISAVAATPMEVLYDTTK GAVHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESNF VNGAHLFVDNGFTAI
Sequences:
>Translated_255_residues MTDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAADETVKQIRDAGGEADCWTADVSDEAAVNSAVAGVED RYGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMFLMTKAVLPKMIAAGGGSIVCTSSISAVAATPMEVLYDTTK GAVHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESNF VNGAHLFVDNGFTAI >Mature_254_residues TDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAADETVKQIRDAGGEADCWTADVSDEAAVNSAVAGVEDR YGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMFLMTKAVLPKMIAAGGGSIVCTSSISAVAATPMEVLYDTTKG AVHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESNFV NGAHLFVDNGFTAI
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=35.9375, Blast_Score=124, Evalue=6e-29, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=30.078125, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=30.9160305343511, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=31.4741035856574, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=31.8897637795276, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.5719844357977, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=26.953125, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=29.0322580645161, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=27.8884462151394, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=31.0880829015544, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI40807363, Length=189, Percent_Identity=30.6878306878307, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI20149619, Length=235, Percent_Identity=28.936170212766, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=27.6595744680851, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=30.6451612903226, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=29.6943231441048, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI310128830, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI310115468, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.8429319371728, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI142976729, Length=188, Percent_Identity=25, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI157739938, Length=204, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI226371731, Length=190, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31543615, Length=162, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=24.0963855421687, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7705855, Length=195, Percent_Identity=24.6153846153846, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=27.4131274131274, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI302344755, Length=107, Percent_Identity=35.5140186915888, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.5490196078431, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=31.8548387096774, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=29.6, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=31.7460317460317, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=31.0756972111554, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=32.1138211382114, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=30.2788844621514, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=27.9352226720648, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787820, Length=230, Percent_Identity=22.6086956521739, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=27.3809523809524, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787526, Length=222, Percent_Identity=25.6756756756757, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=24.0458015267176, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=36.4, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=31.7073170731707, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17561402, Length=275, Percent_Identity=30.1818181818182, Blast_Score=120, Evalue=5e-28, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=32.156862745098, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560676, Length=264, Percent_Identity=28.7878787878788, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=29.8892988929889, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=27.3722627737226, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=33.5078534031414, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=29.1044776119403, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=27.3076923076923, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=29.7397769516729, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=28.4615384615385, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=28.4671532846715, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=27.2727272727273, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=25.6704980842912, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=26.7657992565056, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.1368821292776, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=26.2357414448669, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=31.6326530612245, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=28.4210526315789, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=28.6792452830189, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=25.8555133079848, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=26.4, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=27.8810408921933, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=30.4568527918782, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=27.8947368421053, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=27.8947368421053, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=29.3650793650794, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=27.9693486590038, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.8225806451613, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558628, Length=194, Percent_Identity=27.319587628866, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=25.1968503937008, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=26.4248704663212, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=34.9206349206349, Blast_Score=138, Evalue=3e-33, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=33.4645669291339, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=30.6451612903226, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=28.8, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=31.1023622047244, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=32.1243523316062, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=34.2741935483871, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=27.6679841897233, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=32.1243523316062, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=31.2169312169312, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=28.7878787878788, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI281364892, Length=175, Percent_Identity=29.1428571428571, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357673, Length=260, Percent_Identity=25.3846153846154, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI21355631, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221510726, Length=190, Percent_Identity=31.5789473684211, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=25.7731958762887, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=25.7731958762887, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=27.1276595744681, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=27.1276595744681, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=26.5384615384615, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26754; Mature: 26622
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAADETVKQIRDAGGEADC CCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE WTADVSDEAAVNSAVAGVEDRYGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMF EECCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHHHHHHHHHHCCHHHHHHHHHHH LMTKAVLPKMIAAGGGSIVCTSSISAVAATPMEVLYDTTKGAVHMFARAIAVEFRDRNIR HHHHHHHHHHHHCCCCCEEEECCCCHHHCCHHHHHHHCCHHHHHHHHHHHHHEECCCCEE CNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESNF EEEECCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHEEEECCCCCC VNGAHLFVDNGFTAI CCCEEEEEECCCCCC >Mature Secondary Structure TDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAADETVKQIRDAGGEADC CCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE WTADVSDEAAVNSAVAGVEDRYGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMF EECCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHHHHHHHHHHCCHHHHHHHHHHH LMTKAVLPKMIAAGGGSIVCTSSISAVAATPMEVLYDTTKGAVHMFARAIAVEFRDRNIR HHHHHHHHHHHHCCCCCEEEECCCCHHHCCHHHHHHHCCHHHHHHHHHHHHHEECCCCEE CNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESNF EEEECCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHEEEECCCCCC VNGAHLFVDNGFTAI CCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]