Click here to switch to the map view.

The map label for this gene is glcD [C]

Identifier: 209548152

GI number: 209548152

Start: 567587

End: 569023

Strand: Reverse

Name: glcD [C]

Synonym: Rleg2_0546

Alternate gene names: 209548152

Gene position: 569023-567587 (Counterclockwise)

Preceding gene: 209548153

Following gene: 209548150

Centisome position: 12.54

GC content: 64.3

Gene sequence:

>1437_bases
ATGAGCAGCACCGGCATTTCCACCGAACTTCTCGACCGTTTCGCAGCCATCGTCGGCGATAAATACGCGCTTCGGGGCGA
GGCCGATCTTGCGCCGCATCTGGTCGAAAACCGCGGCCTCTATCATGGCTCCTCCCCTCTCCTGCTGAAACCCGGCTCGG
TCGAGGAAGTCTCGGCTATCATGAAGCTTGCGACGGAGACCGGGACGGCGATCGTACCGCAGACCGGCAATACCGGCCTC
GTCGGCGGCCAGACGCCGCGTGCCGGCCAGTCCGATATCATCCTGTCGCTCGAGCGCATGAACCGGATCCGCGATGTCGA
TCCGGTTGCGAACGTGCTGGTCGCCGACGGCGGCGCCATCCTCGCCGATGTGCAGAAGGCGGCCGAAGCGCATGGGCGGC
TGTTTCCGCTGTCGCTCGGCTCCGAGGGCTCCTGCCGCATCGGCGGCAACCTTTCCACCAATGCCGGCGGCACGGCGGTG
CTGGCCTATGGCAATATGCGCCAGCTCTGCCTCGGCCTCGAAGTGGTGCTGCCGACCGGCGAGATCTGGGACGGCTTGCG
CCGCCTGAAGAAGGACAATACCGGCTACGACCTGCGCGACCTCTTCATCGGCGCCGAAGGCACGCTCGGCATCATCACCG
GCGCGGTGCTGAAATTGTTTCCCCAGCCGCTCGGCCATCAGGTGGCATTCGCCGGCCTGAATTCGGTGGCGGATGCGCTT
GGTCTCTTCAACCTTGCCTCCAGCCTCTGCGGCACTTCGCTCACCGGTTTCGAGCTGATGCCGCGTTTCGGCGTCGAAAT
CACCACGCGCCATATCGATGGCGTGCGCGATCCGCTGCAAGCGGCCTATCCCTGGTATGTGCTGATCGATATCTCGACGT
CCGACTCGGCCGAGACGGCGGAGCGGATGATGAACGGCGTGCTCGAACAGGGTTTTGCGGCCGGGCTGGTTCTCGATGCC
GCCATCGCCTCATCGGTGGCGCAGCAGCAGGCGATCTGGCACATGCGCGAGAGCATGTCGGATGCCCAGAAGCCCGAAGG
CGGGTCGATCAAGCACGATGTTTCCGTGCCGGTGTCGCGGATCCCGCATTTCATGGCGGAGGCCGCGGACGCGGTCCTGG
CGGCGATGCCCGGAGCCCGCATCTGCGCCTTCGGCCATATGGGCGACGGCAATATCCATTACAATATTTCCCAGCCGGTC
GGCGCCGACAAAGCCGCCTTCATCGGCCGCTGGCGCGAAATGAACCAAATCGTCCATGGGCTGGTGCTGGCGCATGGCGG
CTCGATCTCGGCCGAGCACGGCATCGGCCAGCTGAAGCGCGACGAGCTTGCAGCAATCCGCCCGGCGATCGAAATCGAAC
TGATGCGCCGCATCAAGCGCGCCTTCGATCCGGCAAATATTATGAACCCGGGAAAAGTGGTCAGCCTCGAGATTTGA

Upstream 100 bases:

>100_bases
CGAAGAGGGGCTCGGCGAAGCGATCAACGACCGCCTGCAGCGGGCGGCGGCGCCGCGCGACTGACAGACCCGATCAAATC
GACCGAGGAGACCGACCCCG

Downstream 100 bases:

>100_bases
GGGTGACGGTTGGGGGCAGCCCCTCATCCGCCTGCCGGCACCTTCTCCCCGTAAACGGGGCGAAGGGGACAAGCCGCTAC
CTCTCCGTCCCTCGCCAGAG

Product: FAD linked oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSSTGISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAIMKLATETGTAIVPQTGNTGL
VGGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAILADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAV
LAYGNMRQLCLGLEVVLPTGEIWDGLRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADAL
GLFNLASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETAERMMNGVLEQGFAAGLVLDA
AIASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSRIPHFMAEAADAVLAAMPGARICAFGHMGDGNIHYNISQPV
GADKAAFIGRWREMNQIVHGLVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEI

Sequences:

>Translated_478_residues
MSSTGISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAIMKLATETGTAIVPQTGNTGL
VGGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAILADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAV
LAYGNMRQLCLGLEVVLPTGEIWDGLRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADAL
GLFNLASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETAERMMNGVLEQGFAAGLVLDA
AIASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSRIPHFMAEAADAVLAAMPGARICAFGHMGDGNIHYNISQPV
GADKAAFIGRWREMNQIVHGLVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEI
>Mature_477_residues
SSTGISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAIMKLATETGTAIVPQTGNTGLV
GGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAILADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAVL
AYGNMRQLCLGLEVVLPTGEIWDGLRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADALG
LFNLASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETAERMMNGVLEQGFAAGLVLDAA
IASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSRIPHFMAEAADAVLAAMPGARICAFGHMGDGNIHYNISQPVG
ADKAAFIGRWREMNQIVHGLVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEI

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=470, Percent_Identity=37.6595744680851, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI37595756, Length=439, Percent_Identity=29.8405466970387, Blast_Score=153, Evalue=4e-37,
Organism=Homo sapiens, GI37595754, Length=465, Percent_Identity=28.1720430107527, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI4501993, Length=187, Percent_Identity=28.8770053475936, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789351, Length=461, Percent_Identity=28.4164859002169, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI48994907, Length=219, Percent_Identity=26.027397260274, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17534361, Length=451, Percent_Identity=33.9246119733925, Blast_Score=255, Evalue=3e-68,
Organism=Caenorhabditis elegans, GI71992373, Length=496, Percent_Identity=28.4274193548387, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71992381, Length=496, Percent_Identity=27.6209677419355, Blast_Score=131, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI71992392, Length=387, Percent_Identity=28.9405684754522, Blast_Score=119, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6320023, Length=479, Percent_Identity=34.6555323590814, Blast_Score=299, Evalue=6e-82,
Organism=Saccharomyces cerevisiae, GI6320764, Length=479, Percent_Identity=35.9081419624217, Blast_Score=293, Evalue=3e-80,
Organism=Saccharomyces cerevisiae, GI6320027, Length=465, Percent_Identity=27.9569892473118, Blast_Score=147, Evalue=3e-36,
Organism=Drosophila melanogaster, GI18921117, Length=466, Percent_Identity=36.0515021459227, Blast_Score=277, Evalue=1e-74,
Organism=Drosophila melanogaster, GI24639277, Length=466, Percent_Identity=36.0515021459227, Blast_Score=277, Evalue=1e-74,
Organism=Drosophila melanogaster, GI24639275, Length=466, Percent_Identity=36.0515021459227, Blast_Score=277, Evalue=1e-74,
Organism=Drosophila melanogaster, GI24653753, Length=473, Percent_Identity=21.9873150105708, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50589; Mature: 50457

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTGISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAI
CCCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCCEECCCCCEECCCCHHHHHHH
MKLATETGTAIVPQTGNTGLVGGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAI
HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHEEEHHHHHHHCCCCHHHHEEEECCCHH
LADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAVLAYGNMRQLCLGLEVVLPTG
HHHHHHHHHHCCCEEEEECCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHCEEEEECCH
EIWDGLRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADAL
HHHHHHHHHHCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GLFNLASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETA
HHHHHHHHHHCCCCCCHHHHHCCCCEEEEEHHCCHHHHHHHCCCEEEEEEECCCCCHHHH
ERMMNGVLEQGFAAGLVLDAAIASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHH
IPHFMAEAADAVLAAMPGARICAFGHMGDGNIHYNISQPVGADKAAFIGRWREMNQIVHG
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
LVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEI
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
SSTGISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAI
CCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCCEECCCCCEECCCCHHHHHHH
MKLATETGTAIVPQTGNTGLVGGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAI
HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHEEEHHHHHHHCCCCHHHHEEEECCCHH
LADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAVLAYGNMRQLCLGLEVVLPTG
HHHHHHHHHHCCCEEEEECCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHCEEEEECCH
EIWDGLRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADAL
HHHHHHHHHHCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GLFNLASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETA
HHHHHHHHHHCCCCCCHHHHHCCCCEEEEEHHCCHHHHHHHCCCEEEEEEECCCCCHHHH
ERMMNGVLEQGFAAGLVLDAAIASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHH
IPHFMAEAADAVLAAMPGARICAFGHMGDGNIHYNISQPVGADKAAFIGRWREMNQIVHG
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
LVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEI
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]