BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is ykvO [H]

Identifier: 209548042

GI number: 209548042

Start: 446415

End: 447170

Strand: Direct

Name: ykvO [H]

Synonym: Rleg2_0435

Alternate gene names: 209548042

Gene position: 446415-447170 (Clockwise)

Preceding gene: 209548040

Following gene: 209548043

Centisome position: 9.84

GC content: 62.3

Gene sequence:

>756_bases
ATGACACAACGACTGAATGCGAAGATTGCAGTTATCACTGGCGCCACGTCCGGGATCGGCCTTGCCGCAGCGAAACGCTT
CGTGGCTGAGGGCGCACGGGTCTTCATCACCGGCCGCCGCAAGGACGTTCTCGCTGCGGCAATCGCTGAAATCGGCGGCG
GGGTTGTGGGGATCCAGGCGGATTCAGCCAACCTCGCTGACCTCGATCGCCTCTATGAGGAGGTGAAGGCTGAGGCCGGG
AGAGTTGACGTGCTCTTCGTCAACGCAGGTGGCGGCTCCATGTTGCCCCTCGGCGAAATCACGGAAGAGCAGTATGACGA
CACATTCGATCGAAACGTGAAGGGGGTTCTCTTTACGGTGCAGAAGGCCTTGCCGCTGCTCTCGCCAGGAGCATCGGTCA
TCTTGACGGGATCAACAGCAGGCTCGGGCGGCACACCCGCCTTCAGCGTCTACGCCGCATCGAAAGCTGCCTTGCGCAGC
TTTGCGCGCAACTGGATCCTCGACTTGAAGGATCGCGGCATTCGGATCAACACGCTCAGTCCTGGCCCGACGGAAACGAC
CGGACTGGTCGAATTGGCGGGTAAGGATCCAGCCCACCAGCAGGGTTTGCTCGATGCCCTGGCGGCCCAGGTGCCAATGG
GCAGGGTTGGCCGTGCCGAGGAGGTTGCCGCGGCCGCACTCTTCCTCGCCTCGGATGATTCCAGCTTCGTCACCGGTGCC
GAACTCTTCGTCGATGGCGGCAGCGCCCAGGTGTAA

Upstream 100 bases:

>100_bases
TTGTTCATTTCATTCCTGAAACAATGGCTTTCAATTCTTTCTATTCCGAAACGATATCCTCGTCCATATCTCAGCTTCAG
TCGAGCTAAAGGAGACGACA

Downstream 100 bases:

>100_bases
AGACAATATCGGCTTTGCGGATGCCCGCGGCAAGCCGCCCCTGGCATCCGCTGAACCTTTCCGCTAATGCTCCTCGCGAC
ATGCGAAAGCGGAAAAGGAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLAAAIAEIGGGVVGIQADSANLADLDRLYEEVKAEAG
RVDVLFVNAGGGSMLPLGEITEEQYDDTFDRNVKGVLFTVQKALPLLSPGASVILTGSTAGSGGTPAFSVYAASKAALRS
FARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPAHQQGLLDALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGA
ELFVDGGSAQV

Sequences:

>Translated_251_residues
MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLAAAIAEIGGGVVGIQADSANLADLDRLYEEVKAEAG
RVDVLFVNAGGGSMLPLGEITEEQYDDTFDRNVKGVLFTVQKALPLLSPGASVILTGSTAGSGGTPAFSVYAASKAALRS
FARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPAHQQGLLDALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGA
ELFVDGGSAQV
>Mature_250_residues
TQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLAAAIAEIGGGVVGIQADSANLADLDRLYEEVKAEAGR
VDVLFVNAGGGSMLPLGEITEEQYDDTFDRNVKGVLFTVQKALPLLSPGASVILTGSTAGSGGTPAFSVYAASKAALRSF
ARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPAHQQGLLDALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAE
LFVDGGSAQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=30.859375, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=30.8300395256917, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.1652892561983, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=30.7392996108949, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=30.2904564315353, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=30.6513409961686, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=25.3968253968254, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=33.6283185840708, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=32, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=32.0855614973262, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=32.9787234042553, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI209862901, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI19923983, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4503301, Length=229, Percent_Identity=29.6943231441048, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI223718074, Length=197, Percent_Identity=30.9644670050761, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=32.8, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=34.412955465587, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.8804780876494, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=32.9457364341085, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=32.7683615819209, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=32.9365079365079, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=29.4820717131474, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=29.3172690763052, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.0196078431373, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=27.8225806451613, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=26.7206477732794, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=25.5905511811024, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=34.5864661654135, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=33.7121212121212, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=32.3308270676692, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=32.5842696629214, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=31.9702602230483, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=33.969465648855, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=32.7067669172932, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.9433962264151, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.258064516129, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=31.7164179104478, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=32.5396825396825, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=31.3653136531365, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=31.2267657992565, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.968253968254, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=31.2267657992565, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=30.9160305343511, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=30.4511278195489, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=31.8725099601594, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=28.6821705426357, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.4511278195489, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=31.2977099236641, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=33.2075471698113, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=263, Percent_Identity=32.319391634981, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=31.6602316602317, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=30.3643724696356, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193207185, Length=146, Percent_Identity=33.5616438356164, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=25.7936507936508, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=175, Percent_Identity=28, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=207, Percent_Identity=29.951690821256, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=34.6774193548387, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=33.6, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=34.4262295081967, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=34.2741935483871, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=34.2741935483871, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=29.2490118577075, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.2709163346614, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007236, Length=249, Percent_Identity=28.5140562248996, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=27.4193548387097, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25787; Mature: 25655

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLAAAIAEIGGGVVGIQA
CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEE
DSANLADLDRLYEEVKAEAGRVDVLFVNAGGGSMLPLGEITEEQYDDTFDRNVKGVLFTV
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCHHEEEH
QKALPLLSPGASVILTGSTAGSGGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLS
HHHCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEECCCCEEEEECC
PGPTETTGLVELAGKDPAHQQGLLDALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGA
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHEEEEEEECCCCCEEEEE
ELFVDGGSAQV
EEEEECCCCCC
>Mature Secondary Structure 
TQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLAAAIAEIGGGVVGIQA
CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEE
DSANLADLDRLYEEVKAEAGRVDVLFVNAGGGSMLPLGEITEEQYDDTFDRNVKGVLFTV
CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCHHEEEH
QKALPLLSPGASVILTGSTAGSGGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLS
HHHCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEECCCCEEEEECC
PGPTETTGLVELAGKDPAHQQGLLDALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGA
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHEEEEEEECCCCCEEEEE
ELFVDGGSAQV
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]