| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is dppD [H]
Identifier: 209548001
GI number: 209548001
Start: 406915
End: 407931
Strand: Direct
Name: dppD [H]
Synonym: Rleg2_0393
Alternate gene names: 209548001
Gene position: 406915-407931 (Clockwise)
Preceding gene: 209548000
Following gene: 209548002
Centisome position: 8.97
GC content: 63.72
Gene sequence:
>1017_bases ATGCCACTTCTCGAAATTGAAAATCTGACCGTCGAATTCCAGACCTCTTCAGGTCTTTTCCGCGCTGTCGACCGCGTATC GCTAGCCTGCGACAAGGGCGAGATCCTGTCGGTGGTCGGTGAATCCGGTTCAGGCAAATCCGTTGCCATGCTGGCGCTGA TGGGGCTTCTGCCCTGGACGGCGAAGATCACTGCCGACCGCATGCAGTTCGACGGCCAGGATCTGCGGGGGATCTCCGGC CGCCAGCGCCGCAGGATCGTCGGCAAGGACATGGCGATGATCTTCCAGGAGCCGATGTCGAGCCTCAATCCGTGTTTCAC CGTCGGCTTTCAGCTCGGTGAGACCTTGCGCGTCCATATGGGCCTCAACCGGAAGGAGCGCCGCGAACGTTCGATCGAGC TTCTGAACCTCGTCGGCATTCCGGCGCCGGAAGACCGGCTGTCGAACTTCCCGCATCAGATGTCCGGCGGCATGAGCCAG CGCGTGATGATCGCCATGGCGCTCGCCTGCAATCCGAAGCTCTTGATCGCCGATGAGCCGACGACTGCGCTCGACGTGAC GATCCAGGCGCAGATCCTCGATCTGCTCGTGCGCCTGCAGAAAGAGCAGGGCATGGCGCTGGTGCTGATCACCCACGATA TGGGTGTCGTTGCCGAAACCGCCGAGCGCGTGCAGGTGCAATATGCCGGCCAGAAGGTCGAGGAGCAGCCGGTAAAGGCG CTGTTCCGCGATCCGCACCACCCCTATACCGCAGCCCTTCTCGCCGCCCTGCCGGAACGCGCCCAGATCGGCCAGCGTCT TCCCTCGATCGCCGGCGTCGTTCCCGGCCAGCACGGCCGCCCGACCGGCTGTCTTTTCGCGCCGCGCTGTGGCTACGCCA CCGTCGAATGCGATCGCGGCGTCGTCCGCCAGGGGCCGGAGCTCGGGCTGGCTTTGTGCAATTATCCTTTGAAGGACGGC AAGCCGCTCGGCCATCCCGGCGTCATGGCCACTGAAACTGCAGGAGACCTGGTATGA
Upstream 100 bases:
>100_bases TAACATTCCCGGGCCTTGCCATCCTCATCACCGTTCTCGCCATCAATCTGATGGGTGACGGCCTGCGCGATGCGCTTGAC CCCAAGCTGAAGAGGTCGTG
Downstream 100 bases:
>100_bases CGGGCGCTGTTCTCGAGGGCAGGGATCTCGCCCGCTTCTACACCGTCAACCGCGGTCTCTTCAAAGCCGATGCCACGGTC AAGGCGCTGAACGGCGTCAG
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MPLLEIENLTVEFQTSSGLFRAVDRVSLACDKGEILSVVGESGSGKSVAMLALMGLLPWTAKITADRMQFDGQDLRGISG RQRRRIVGKDMAMIFQEPMSSLNPCFTVGFQLGETLRVHMGLNRKERRERSIELLNLVGIPAPEDRLSNFPHQMSGGMSQ RVMIAMALACNPKLLIADEPTTALDVTIQAQILDLLVRLQKEQGMALVLITHDMGVVAETAERVQVQYAGQKVEEQPVKA LFRDPHHPYTAALLAALPERAQIGQRLPSIAGVVPGQHGRPTGCLFAPRCGYATVECDRGVVRQGPELGLALCNYPLKDG KPLGHPGVMATETAGDLV
Sequences:
>Translated_338_residues MPLLEIENLTVEFQTSSGLFRAVDRVSLACDKGEILSVVGESGSGKSVAMLALMGLLPWTAKITADRMQFDGQDLRGISG RQRRRIVGKDMAMIFQEPMSSLNPCFTVGFQLGETLRVHMGLNRKERRERSIELLNLVGIPAPEDRLSNFPHQMSGGMSQ RVMIAMALACNPKLLIADEPTTALDVTIQAQILDLLVRLQKEQGMALVLITHDMGVVAETAERVQVQYAGQKVEEQPVKA LFRDPHHPYTAALLAALPERAQIGQRLPSIAGVVPGQHGRPTGCLFAPRCGYATVECDRGVVRQGPELGLALCNYPLKDG KPLGHPGVMATETAGDLV >Mature_337_residues PLLEIENLTVEFQTSSGLFRAVDRVSLACDKGEILSVVGESGSGKSVAMLALMGLLPWTAKITADRMQFDGQDLRGISGR QRRRIVGKDMAMIFQEPMSSLNPCFTVGFQLGETLRVHMGLNRKERRERSIELLNLVGIPAPEDRLSNFPHQMSGGMSQR VMIAMALACNPKLLIADEPTTALDVTIQAQILDLLVRLQKEQGMALVLITHDMGVVAETAERVQVQYAGQKVEEQPVKAL FRDPHHPYTAALLAALPERAQIGQRLPSIAGVVPGQHGRPTGCLFAPRCGYATVECDRGVVRQGPELGLALCNYPLKDGK PLGHPGVMATETAGDLV
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI21536376, Length=229, Percent_Identity=27.5109170305677, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9961250, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=203, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789963, Length=329, Percent_Identity=56.838905775076, Blast_Score=383, Evalue=1e-107, Organism=Escherichia coli, GI1787548, Length=326, Percent_Identity=43.558282208589, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=52.0912547528517, Blast_Score=255, Evalue=2e-69, Organism=Escherichia coli, GI48994883, Length=296, Percent_Identity=43.9189189189189, Blast_Score=246, Evalue=2e-66, Organism=Escherichia coli, GI1787759, Length=322, Percent_Identity=41.304347826087, Blast_Score=243, Evalue=2e-65, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=47.8599221789883, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1787500, Length=310, Percent_Identity=39.6774193548387, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1789962, Length=296, Percent_Identity=36.8243243243243, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1787758, Length=286, Percent_Identity=39.8601398601399, Blast_Score=171, Evalue=5e-44, Organism=Escherichia coli, GI1789890, Length=252, Percent_Identity=38.4920634920635, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=35.2713178294574, Blast_Score=149, Evalue=3e-37, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=32.4324324324324, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1789891, Length=278, Percent_Identity=34.8920863309352, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789032, Length=245, Percent_Identity=33.0612244897959, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1786398, Length=265, Percent_Identity=32.4528301886792, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=261, Percent_Identity=32.9501915708812, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=31.6666666666667, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787712, Length=247, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI87081834, Length=229, Percent_Identity=31.4410480349345, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=33.7899543378995, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI87081791, Length=285, Percent_Identity=32.6315789473684, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=33.6134453781513, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=34.841628959276, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=35.3846153846154, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.1338582677165, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786563, Length=197, Percent_Identity=32.48730964467, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788761, Length=248, Percent_Identity=29.4354838709677, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788450, Length=267, Percent_Identity=28.4644194756554, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=27.0386266094421, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788644, Length=178, Percent_Identity=33.7078651685393, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790162, Length=247, Percent_Identity=25.5060728744939, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1789991, Length=246, Percent_Identity=29.6747967479675, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=28.5123966942149, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=32.6732673267327, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=30.7339449541284, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=26.7543859649123, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=27.3127753303965, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=30.9012875536481, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082268, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787792, Length=236, Percent_Identity=29.6610169491525, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789593, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI87082267, Length=249, Percent_Identity=25.7028112449799, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=212, Percent_Identity=25.9433962264151, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790544, Length=267, Percent_Identity=28.0898876404494, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=28.4403669724771, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=25.7383966244726, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=224, Percent_Identity=28.125, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788002, Length=207, Percent_Identity=31.4009661835749, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=221, Percent_Identity=28.5067873303167, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=27.5423728813559, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567269, Length=217, Percent_Identity=29.4930875576037, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17552232, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115535101, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574744, Length=182, Percent_Identity=31.3186813186813, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI28574533, Length=237, Percent_Identity=27.0042194092827, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI281362751, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36724; Mature: 36593
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLEIENLTVEFQTSSGLFRAVDRVSLACDKGEILSVVGESGSGKSVAMLALMGLLPWT CCCEEEECEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCH AKITADRMQFDGQDLRGISGRQRRRIVGKDMAMIFQEPMSSLNPCFTVGFQLGETLRVHM HHEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEEEEE GLNRKERRERSIELLNLVGIPAPEDRLSNFPHQMSGGMSQRVMIAMALACNPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQILDLLVRLQKEQGMALVLITHDMGVVAETAERVQVQYAGQKVEEQPVKA CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH LFRDPHHPYTAALLAALPERAQIGQRLPSIAGVVPGQHGRPTGCLFAPRCGYATVECDRG HHCCCCCHHHHHHHHHCCHHHHHHHHCCHHHCCCCCCCCCCCCEEECCCCCCEEEECCCC VVRQGPELGLALCNYPLKDGKPLGHPGVMATETAGDLV HHHCCCCCCHHEECCCCCCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure PLLEIENLTVEFQTSSGLFRAVDRVSLACDKGEILSVVGESGSGKSVAMLALMGLLPWT CCEEEECEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCH AKITADRMQFDGQDLRGISGRQRRRIVGKDMAMIFQEPMSSLNPCFTVGFQLGETLRVHM HHEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEEEEE GLNRKERRERSIELLNLVGIPAPEDRLSNFPHQMSGGMSQRVMIAMALACNPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQILDLLVRLQKEQGMALVLITHDMGVVAETAERVQVQYAGQKVEEQPVKA CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH LFRDPHHPYTAALLAALPERAQIGQRLPSIAGVVPGQHGRPTGCLFAPRCGYATVECDRG HHCCCCCHHHHHHHHHCCHHHHHHHHCCHHHCCCCCCCCCCCCEEECCCCCCEEEECCCC VVRQGPELGLALCNYPLKDGKPLGHPGVMATETAGDLV HHHCCCCCCHHEECCCCCCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]