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The map label for this gene is rirA [H]

Identifier: 209547997

GI number: 209547997

Start: 402484

End: 402966

Strand: Direct

Name: rirA [H]

Synonym: Rleg2_0389

Alternate gene names: 209547997

Gene position: 402484-402966 (Clockwise)

Preceding gene: 209547996

Following gene: 209547998

Centisome position: 8.87

GC content: 60.25

Gene sequence:

>483_bases
ATGCGGTTGACGAAGCAGACCAATTATGCGGTTCGCATGTTGATGTATTGTGCTGCCAACGACGGGCACTTGAGCCGGAT
TCCGGAAATCGCCAGGGCTTACGGCGTGTCCGAACTGTTTCTTTTCAAGATCCTCCAGCCGCTGAACAAGGCCGGCCTCG
TCGAAACCGTGCGCGGTCGCAATGGCGGCGTGCGCCTGGGCAAGCCGGCCGCCGACATTACGCTGTTCGACGTCGTCAGG
GTGACGGAAGACAGTTTCGCCATGGCCGAATGCTTCGAGGATGACGGCGTGGTCGAATGCCCGCTGGTTGACAGCTGCGG
CCTGAATTCGGCGCTGCGCAAGGCGCTTAACGCCTTCTTCGCCGTGCTGTCGGAATATTCCATCGACGACCTCGTCAAGG
CGCGTCCACAGATCAATTTCCTTCTCGGAATCACCGGCGAGCAGCCGTATCGCAAACCCGCGATCGTTGCGCCTGCCGCC
TGA

Upstream 100 bases:

>100_bases
AATGGCCTCATAAGCTGAATGCGAATTTCATATTTTGGAATTGTTCAAAACTACCAAACCGCCTATATAGGTCTGAACAG
GCACGAGTCAGGAGAATGGC

Downstream 100 bases:

>100_bases
ATTCAAAAGAGCAGGACGGAGTTTTGAAACCGCGGTGGCCCCGGCCATCGCGGTTTTTATTTTGCCGCGTCTGGCCGGCC
CGGCGAGAATAAACGGCTTA

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAADITLFDVVR
VTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFFAVLSEYSIDDLVKARPQINFLLGITGEQPYRKPAIVAPAA

Sequences:

>Translated_160_residues
MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAADITLFDVVR
VTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFFAVLSEYSIDDLVKARPQINFLLGITGEQPYRKPAIVAPAA
>Mature_160_residues
MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAADITLFDVVR
VTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFFAVLSEYSIDDLVKARPQINFLLGITGEQPYRKPAIVAPAA

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=144, Percent_Identity=39.5833333333333, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17512; Mature: 17512

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHCCC
NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF
CCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHH
AVLSEYSIDDLVKARPQINFLLGITGEQPYRKPAIVAPAA
HHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCC
>Mature Secondary Structure
MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHCCC
NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF
CCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHH
AVLSEYSIDDLVKARPQINFLLGITGEQPYRKPAIVAPAA
HHHHCCCHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]