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The map label for this gene is sdiA [H]

Identifier: 209547895

GI number: 209547895

Start: 292669

End: 293373

Strand: Direct

Name: sdiA [H]

Synonym: Rleg2_0287

Alternate gene names: 209547895

Gene position: 292669-293373 (Clockwise)

Preceding gene: 209547894

Following gene: 209547896

Centisome position: 6.45

GC content: 58.58

Gene sequence:

>705_bases
ATGAACAACGCCCCGGCAATTCCCTTTCATGCCGGACCGGAGCTGAGCCGGGCGATCAACCGCACCGATTTTTTCCGCCT
GCTGAAGTCGGCGGCACAGCACTACAACTTCGATAATTTCGCGCTTGCCCGCATTTCCGAGACTTCGGCTCCTTTCGGGG
AACGCGATATCGTCATCACCAATGTCGCCGAACGGCGTGTCGGTCTTTTCATCACGACGTTGAAGGAAGCGCTCGGGACC
GTTCGGGCAAAGTCCGCCCAGTTTCTGGCAACGCCGGTTCACGGCAGAAGCGTACGGCCGGAAGATTATCGCTCGGATCT
CGTGTTCAACGAGTTCCTGAGCGGCGTCTTTCTGTTCATCCCGCTGTTCACCCCCGAAGGGCGGCGCTATTGCCTCGTCC
TCAGCGGCGAGCGTCAGGAGCCGGATCAGAGCGAGATCGCCGACATGCTTCTCGACGCCATGCGGATTTTCGACAAGCTT
TATGAGGAAATCCTGACGCAGGAAATGTCCGGGCGGCTCACCCAGCGCGAGCAGGAAATCGTCAAATGGACGAGCGAAGG
CAAGACGTCGGCTGAGATCGCCATCATTCTCGGTCTTTCCGAACATACGGTCAATTCGCACATCACCGCGGCTGCGCGTA
AACTTGACGCTGTCAACCGCGTTCACATGGTGGCGATCGCCTTGCGGAACGGCTTGGTCACGTGA

Upstream 100 bases:

>100_bases
ATTCGTCATCAACTGTCTCGCAATTTTTGTAGCTCTTCGCGTTTAAGACGTATATCCCAAGATTTCGGGATCGGAGGCAT
CGAGGAGAGGAAGAGTGGGA

Downstream 100 bases:

>100_bases
AGCCGGTTTCGGGATTGGGGAAATTAAGTCGATGACCACCGAAACTGTGCGAAAGAATGCCGTGAAGGTTCTCTTCGTCG
ACGACGAATTCATCGAATTC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNNAPAIPFHAGPELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFITTLKEALGT
VRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKL
YEEILTQEMSGRLTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT

Sequences:

>Translated_234_residues
MNNAPAIPFHAGPELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFITTLKEALGT
VRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKL
YEEILTQEMSGRLTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT
>Mature_234_residues
MNNAPAIPFHAGPELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFITTLKEALGT
VRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKL
YEEILTQEMSGRLTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT

Specific function: Activates cell division by specifically increasing transcription from one of the two promoters that lie immediately upstream of the ftsQAZ gene cluster. Activates ydiV expression in response to extracellular autoinducer AI-1 (Vibrio fischeri autoinducer o

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=101, Percent_Identity=40.5940594059406, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26263; Mature: 26263

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAPAIPFHAGPELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVIT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEE
NVAERRVGLFITTLKEALGTVRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFI
EHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
PLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGRLTQREQEI
EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
VKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT
HHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNNAPAIPFHAGPELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVIT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEE
NVAERRVGLFITTLKEALGTVRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFI
EHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
PLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGRLTQREQEI
EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
VKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT
HHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3515318; 9097040; 9278503; 1915297 [H]