Click here to switch to the map view.

The map label for this gene is ydcI [H]

Identifier: 209547757

GI number: 209547757

Start: 141561

End: 142802

Strand: Direct

Name: ydcI [H]

Synonym: Rleg2_0146

Alternate gene names: 209547757

Gene position: 141561-142802 (Clockwise)

Preceding gene: 209547750

Following gene: 209547758

Centisome position: 3.12

GC content: 65.62

Gene sequence:

>1242_bases
TTGCATCTCGGCGCCCTGTTCATAAGCCACCATGTGCTGACCTCCGGTTCGGTGCGGGAGACCGCGCGCCGCTTCGAGCT
GTCGCCTTCCACGGTGTCGACGGCGATCCGCCATCTCGAGACCGAGCTGGCGTTCAAGCTGACGGAACGCGCCTCAGGCG
AGCTGGTGACGCTGCTTGCCAGCGGCAGAGTGCTGGAGGGACTGGAGCCGATCACGGCGGCGATCGGCGAGCTCGGTCAA
TTCGCCGGTCATGACGCTGCGGCCGCCGACGCCTACGAGGCCTGGGCATCCCGCATTCCCCTCAAGATCGTCACCATCGA
GCGTTTTCTCGAGGTTGCCGATCAGGGCAGCATCAATCGCGCCGCCCGCCGTCTTCGCTTGGGTCAGCCGCAGCTTTCGC
TTCAGCTTGCCAATCTGGAGAAATTTCTGGGTGGCCGCCTGTTCGAGCGGCAGGCGCAGGGCTCGGTGCTGACGGAGGAG
GGCAGGCGCGCCTACCAGATCTTCACGGCGATCAGCCAGGCCTGGAACGATCTGAAATCGTCGGCCGACGAGCGATATCG
GCGCGCCGCCCGGTCGCTGCGCATCGGCTCGATCATCCCCACCGGCTCGGAAAGCTGGGTGGCGCGCTGCCTGGGCTCGC
TGGTCTCCGAATGGAATGCGCGGCGCAGCAACAATGCGATCTCGCTCGTTTCGATGACCGCCGACGATCTGCGCGAGGCG
CTGAAGAGCGGCCGCATCGATGTGGCGATTCTGGATTCGGTTTTCGGGCTGGAGAGCTTTCGCCATCGCCAATTGCTGCA
GACCGATATGGTGGTGATCGCGCCGCCTGATAGTACCGGAACCACGGTCGCCGATCTCGTCGCCGGCCACGCCATCTGCA
TGCCGAGCCCGCGCACCGGCCTCGGCCATGCGGCGATGGCCTTCAGCGATGAGCGTGCGCCCGACCGGCGCTTGCGCAGC
CGGGATATCACCGCGGCGGATTCGCTGCCGGTGATCGTCGACCTTGTCGCCAATCACGGTTACGTCTCCTTCCTCGGTCG
CGTCAGCGCCATGCCGATCGCCGATAAAGTGCGCATCGTCGATCTCGACGAACATCTGCCGATGTCCTATCACGTCGCCT
TCAACCATCGCAAAGCCGCCGCCGATGCCTGCGCCGTCATCATCGAAGCGGCGGCGAGACTTACATCGGAAGCCGTCGCG
CAGACCATGGCGCGCGCCGAAGCCAGGGAGAGCGCCGCGTGA

Upstream 100 bases:

>100_bases
ATGACGAGAACGATAGCCCGCCTCCTCAGATGCAGGGATATCTTTTTTCGTGAACACATCATATCGTCTGGTTTTTCCAG
CGCTTTCCGGAGGGAGAGAT

Downstream 100 bases:

>100_bases
CCATCCTGCTGGAAGTGTGTGTGGATAGCGCCGAGGGCCTTGCCGCCGCGATTGAAGGCGGCGCCGGCCGCATCGAGCTC
TGCTCGGCGCTGGAGCTCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MHLGALFISHHVLTSGSVRETARRFELSPSTVSTAIRHLETELAFKLTERASGELVTLLASGRVLEGLEPITAAIGELGQ
FAGHDAAAADAYEAWASRIPLKIVTIERFLEVADQGSINRAARRLRLGQPQLSLQLANLEKFLGGRLFERQAQGSVLTEE
GRRAYQIFTAISQAWNDLKSSADERYRRAARSLRIGSIIPTGSESWVARCLGSLVSEWNARRSNNAISLVSMTADDLREA
LKSGRIDVAILDSVFGLESFRHRQLLQTDMVVIAPPDSTGTTVADLVAGHAICMPSPRTGLGHAAMAFSDERAPDRRLRS
RDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIVDLDEHLPMSYHVAFNHRKAAADACAVIIEAAARLTSEAVA
QTMARAEARESAA

Sequences:

>Translated_413_residues
MHLGALFISHHVLTSGSVRETARRFELSPSTVSTAIRHLETELAFKLTERASGELVTLLASGRVLEGLEPITAAIGELGQ
FAGHDAAAADAYEAWASRIPLKIVTIERFLEVADQGSINRAARRLRLGQPQLSLQLANLEKFLGGRLFERQAQGSVLTEE
GRRAYQIFTAISQAWNDLKSSADERYRRAARSLRIGSIIPTGSESWVARCLGSLVSEWNARRSNNAISLVSMTADDLREA
LKSGRIDVAILDSVFGLESFRHRQLLQTDMVVIAPPDSTGTTVADLVAGHAICMPSPRTGLGHAAMAFSDERAPDRRLRS
RDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIVDLDEHLPMSYHVAFNHRKAAADACAVIIEAAARLTSEAVA
QTMARAEARESAA
>Mature_413_residues
MHLGALFISHHVLTSGSVRETARRFELSPSTVSTAIRHLETELAFKLTERASGELVTLLASGRVLEGLEPITAAIGELGQ
FAGHDAAAADAYEAWASRIPLKIVTIERFLEVADQGSINRAARRLRLGQPQLSLQLANLEKFLGGRLFERQAQGSVLTEE
GRRAYQIFTAISQAWNDLKSSADERYRRAARSLRIGSIIPTGSESWVARCLGSLVSEWNARRSNNAISLVSMTADDLREA
LKSGRIDVAILDSVFGLESFRHRQLLQTDMVVIAPPDSTGTTVADLVAGHAICMPSPRTGLGHAAMAFSDERAPDRRLRS
RDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIVDLDEHLPMSYHVAFNHRKAAADACAVIIEAAARLTSEAVA
QTMARAEARESAA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=148, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 44808; Mature: 44808

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR ; PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLGALFISHHVLTSGSVRETARRFELSPSTVSTAIRHLETELAFKLTERASGELVTLLA
CCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
SGRVLEGLEPITAAIGELGQFAGHDAAAADAYEAWASRIPLKIVTIERFLEVADQGSINR
CCCHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHH
AARRLRLGQPQLSLQLANLEKFLGGRLFERQAQGSVLTEEGRRAYQIFTAISQAWNDLKS
HHHHHHCCCCHHHEEHHHHHHHHCCHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHH
SADERYRRAARSLRIGSIIPTGSESWVARCLGSLVSEWNARRSNNAISLVSMTADDLREA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH
LKSGRIDVAILDSVFGLESFRHRQLLQTDMVVIAPPDSTGTTVADLVAGHAICMPSPRTG
HHCCCCEEEEHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHCCCEEECCCCCCC
LGHAAMAFSDERAPDRRLRSRDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIV
CCCHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEE
DLDEHLPMSYHVAFNHRKAAADACAVIIEAAARLTSEAVAQTMARAEARESAA
ECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHLGALFISHHVLTSGSVRETARRFELSPSTVSTAIRHLETELAFKLTERASGELVTLLA
CCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
SGRVLEGLEPITAAIGELGQFAGHDAAAADAYEAWASRIPLKIVTIERFLEVADQGSINR
CCCHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHH
AARRLRLGQPQLSLQLANLEKFLGGRLFERQAQGSVLTEEGRRAYQIFTAISQAWNDLKS
HHHHHHCCCCHHHEEHHHHHHHHCCHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHH
SADERYRRAARSLRIGSIIPTGSESWVARCLGSLVSEWNARRSNNAISLVSMTADDLREA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH
LKSGRIDVAILDSVFGLESFRHRQLLQTDMVVIAPPDSTGTTVADLVAGHAICMPSPRTG
HHCCCCEEEEHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHCCCEEECCCCCCC
LGHAAMAFSDERAPDRRLRSRDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIV
CCCHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEE
DLDEHLPMSYHVAFNHRKAAADACAVIIEAAARLTSEAVAQTMARAEARESAA
ECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]