Click here to switch to the map view.

The map label for this gene is 209547636

Identifier: 209547636

GI number: 209547636

Start: 21927

End: 22493

Strand: Reverse

Name: 209547636

Synonym: Rleg2_0024

Alternate gene names: NA

Gene position: 22493-21927 (Counterclockwise)

Preceding gene: 209547637

Following gene: 209547635

Centisome position: 0.5

GC content: 59.08

Gene sequence:

>567_bases
ATGTTCATTCAGACCGAAGCCACGCCGAACCCCGCCACGCAGAAGTTCCTGCCGGGCAAGGTGGTGATGGAAAACGGCAC
GGCCGAGTTCCGCAGTGCCGAGGAAGCCGAAGCTTCGCCTCTCGCTGCCCGCCTGTTCGAAATACCGGGCGTCACCGGCG
TCTATTTCGGCTATGATTTCATTTCCGTCTCCAAGGACGATGCCGAATGGCAGCATCTTAAGCCGGCTATATTGGGCTCG
ATCATGGAGCATTTCATGTCGGGCAAGCCTGTCATGGGCGATGCCTCCATCCTCTCCGAAGATGTTGACGCCGGCGACGA
GTTTTTTGACGAAGGCGATGAGTCGATCGTGCTGACCATCAAGGAGCTTCTGGAGACCCGCGTGCGCCCCGCCGTTGCCC
AGGACGGCGGCGACATCACCTTCCGCGGCTTCAAGGACGGCAAGGTCTATCTGAACATGAAGGGTTCCTGCGCCGGCTGC
CCGTCTTCGACGGCAACGCTGAAGCATGGCGTCCAGAACCTGCTGCGTCATTTCGTTCCAGAAGTGCAGGAAGTGATTGC
CGCTTAA

Upstream 100 bases:

>100_bases
TTCTTGAGTAAAAATCTCTTGAATGGCACCGGCAAACGGCTTATCTTCTTTTGAAGAGTTCTAAAGACGGCGAGGCATGG
CCGGCCGCATGGAGACCCAG

Downstream 100 bases:

>100_bases
AAATTCTTGGGTTCGTCCGGCCGTTCATGTCTCGTTCGGCCAGACGAATTTATGATCGGGCGACAATAGATTTTTCGGAA
ATTGATGGCATGATTGTTCT

Product: Scaffold protein Nfu/NifU

Products: NA

Alternate protein names: NifU Domain Protein; NifU Domain-Containing Protein; Nitrogen-Fixing NifU Domain Protein; Nitrogen-Fixing NifU-Like; Nitrogen Fixation Protein; NifU Related Protein; NifU-Like Protein; NifU-Like Domain Protein; NifU-Like Domain-Containing Protein; NifU Protein; NifU Family Protein; Thioredoxin-Like Protein; Nitrogen-Fixing NifU-Like Protein; Scaffold Protein Nfu/Nifu; Nitrogen-Fixing NifU; Nitrogen-Fixing Protein; NFU1 Iron-Sulfur Cluster Scaffold-Like Protein; NifU Iron-Sulphur Cluster Scaffold Protein; Fe-S Cluster Assembly Protein NFU; Nifu Protein; NifU Domain Containing Protein; HIRA-Interacting; Nitrogen-Fixing NifU C-Terminal; Nif System Fes Cluster Assembly Nifu Family Protein; Scaffold Protein Nfu/NifU-Like Protein; Scaffold Protein Nfu/NifU N Terminal; Thioredoxin-Related Protein; NitrogeN-Fixing Nifu Domain Protein; Thioredoxin-Like Domain Protein; Scaffold Protein Nfu/NifU N Terminal Domain Protein; Thioredoxin; Nitrogen-Fixing NifU Domain-Containing Protein; Nitrogen Fixing Thioredoxin-Like Protein NifU

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDFISVSKDDAEWQHLKPAILGS
IMEHFMSGKPVMGDASILSEDVDAGDEFFDEGDESIVLTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGC
PSSTATLKHGVQNLLRHFVPEVQEVIAA

Sequences:

>Translated_188_residues
MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDFISVSKDDAEWQHLKPAILGS
IMEHFMSGKPVMGDASILSEDVDAGDEFFDEGDESIVLTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGC
PSSTATLKHGVQNLLRHFVPEVQEVIAA
>Mature_188_residues
MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDFISVSKDDAEWQHLKPAILGS
IMEHFMSGKPVMGDASILSEDVDAGDEFFDEGDESIVLTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGC
PSSTATLKHGVQNLLRHFVPEVQEVIAA

Specific function: Unknown

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI50593025, Length=187, Percent_Identity=49.1978609625668, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI50593021, Length=187, Percent_Identity=49.1978609625668, Blast_Score=184, Evalue=6e-47,
Organism=Homo sapiens, GI50593023, Length=104, Percent_Identity=47.1153846153846, Blast_Score=103, Evalue=8e-23,
Organism=Homo sapiens, GI50593019, Length=104, Percent_Identity=47.1153846153846, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17541876, Length=190, Percent_Identity=48.4210526315789, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6322811, Length=204, Percent_Identity=34.8039215686275, Blast_Score=122, Evalue=2e-29,
Organism=Drosophila melanogaster, GI45551492, Length=187, Percent_Identity=49.7326203208556, Blast_Score=184, Evalue=4e-47,
Organism=Drosophila melanogaster, GI24643765, Length=187, Percent_Identity=49.7326203208556, Blast_Score=184, Evalue=4e-47,
Organism=Drosophila melanogaster, GI45556188, Length=187, Percent_Identity=49.7326203208556, Blast_Score=184, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20388; Mature: 20388

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF
CEECCCCCCCCCHHHCCCCEEEEECCCHHHHCCCHHHCCHHHHHHHHCCCCCEEEECCEE
ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVMGDASILSEDVDAGDEFFDEGDESIVLTI
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCCCEEEHHH
KELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFVP
HHHHHHHHCCHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
EVQEVIAA
HHHHHHCC
>Mature Secondary Structure
MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF
CEECCCCCCCCCHHHCCCCEEEEECCCHHHHCCCHHHCCHHHHHHHHCCCCCEEEECCEE
ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVMGDASILSEDVDAGDEFFDEGDESIVLTI
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCCCEEEHHH
KELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFVP
HHHHHHHHCCHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
EVQEVIAA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA