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The map label for this gene is ybeY [C]

Identifier: 209547629

GI number: 209547629

Start: 16296

End: 16811

Strand: Reverse

Name: ybeY [C]

Synonym: Rleg2_0017

Alternate gene names: 209547629

Gene position: 16811-16296 (Counterclockwise)

Preceding gene: 209547630

Following gene: 209547628

Centisome position: 0.37

GC content: 58.91

Gene sequence:

>516_bases
ATGGCAGAACTCGACATCCAGATCAGCGTCGACGACATCGGCTGGCCGGGCGAGGAGACGCTGCTGTCCTTTTGCGAACG
CGTGCTCGGCGCAGCCGTGATCTATCTCCGCGACAGCGAGAAACAGCCCTTCCCGACGATGCCGCCCGAGGTCTCGCTTG
TCTTCACCGACGACGCCTCGATCCAGGACATCAATGCCGAATGGCGCGGCAAGGACAAGGCGACCAACGTGCTCTCCTTT
CCGGCCTTTCCGGTTCGGCCCGGCAAGATGCCCGGTCCGATGCTCGGCGACATCATCATCGCCCGGGAGACTGTGGAGCG
GGAAACCATCGAGCTCGAAAAGAGTTTCGACGACCACCTGACCCATCTTCTGGTGCACGGTTTCTTGCATCTTCTCGGCT
ACGACCATATGAATAGTGACGAAGCCGAAATTATGGAGGGGCTGGAGACTCGCATTTTGGCGCAGCTCGGCCTATCTGAT
CCCTACGAGGGTCAAGACCTTAAAATGGAACCATGA

Upstream 100 bases:

>100_bases
AGGATACCGACGTCGTCCGCCATCCGCTGGTCGGGCGCATCGTCAGAGCCTATGATTCCACCTATGCCGCCGAAGCCGAA
GCGGTCAGCCGGCAGGACTG

Downstream 100 bases:

>100_bases
GCGACTTTACGACGAAGCCGGCGGCAGACGCCAAGGACTCCGAGCCATCCTCCTCTTCGGACGAGGCGGGCAGTAGTAGT
CGGCCATCCGGCCGATCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MAELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDASIQDINAEWRGKDKATNVLSF
PAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHLTHLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSD
PYEGQDLKMEP

Sequences:

>Translated_171_residues
MAELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDASIQDINAEWRGKDKATNVLSF
PAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHLTHLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSD
PYEGQDLKMEP
>Mature_170_residues
AELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDASIQDINAEWRGKDKATNVLSFP
AFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHLTHLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDP
YEGQDLKMEP

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=160, Percent_Identity=43.125, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19180; Mature: 19049

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDAS
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECCCC
IQDINAEWRGKDKATNVLSFPAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHL
EEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHH
THLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDPYEGQDLKMEP
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC
>Mature Secondary Structure 
AELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDAS
CEEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECCCC
IQDINAEWRGKDKATNVLSFPAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHL
EEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHH
THLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDPYEGQDLKMEP
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA