Click here to switch to the map view.

The map label for this gene is 209547626

Identifier: 209547626

GI number: 209547626

Start: 12907

End: 13326

Strand: Reverse

Name: 209547626

Synonym: Rleg2_0014

Alternate gene names: NA

Gene position: 13326-12907 (Counterclockwise)

Preceding gene: 209547627

Following gene: 209547625

Centisome position: 0.29

GC content: 57.14

Gene sequence:

>420_bases
ATGATTGAAAACAAAAAGAAGCCGAATCCGATCGACATCCACGTTGGCAGCCGTATTCGTCTTCGCCGAACAATGCTGGG
CATGAGCCAGGAAAAACTCGGCGAAAGCCTCGGCATCACATTCCAGCAGATCCAGAAATACGAAAAAGGCACCAACCGCG
TCGGCGCAAGCCGTCTGCAGAACATCTCGAACATCCTCAATGTTCCGGTTTCCTTTTTCTTCGAGGACGCACCCGGCGAA
CATGCCGGCGCCGGCGGCGGCATGGCCGAAGCCTCCAGCTCGAATTACGTCGTCGATTTCCTCTCCTCTTCCGAAGGCCT
GCAGCTCAACCGCGCCTTCGTCAAGATTTCCGATCCGAAGGTTCGCCGCAAGGTCGTGGAGCTGGTGAAGGCTCTGGCAG
CCGAGGCCGACTCCGACTGA

Upstream 100 bases:

>100_bases
TATGTTCAAAGGTGGGTTCTCACCGCTTGCAACGTGGCGTTTGGGATGGATCAGGGGCATGCCGGTTAAACAGGTTGAAA
TTCTTAGCTAGGGCACGACC

Downstream 100 bases:

>100_bases
GCCACACCCATCGCAGAATCCCAAAGGCGGTCGAAAGGCCGCCTTTTTTGCGGTTTTGGGGCAAAATTTGTCACTTTGCC
GCAGATATAAAGATATATTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISNILNVPVSFFFEDAPGE
HAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAEADSD

Sequences:

>Translated_139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISNILNVPVSFFFEDAPGE
HAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAEADSD
>Mature_139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISNILNVPVSFFFEDAPGE
HAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAEADSD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15206; Mature: 15206

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ
CCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
NISNILNVPVSFFFEDAPGEHAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK
HHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHH
VRRKVVELVKALAAEADSD
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ
CCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
NISNILNVPVSFFFEDAPGEHAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK
HHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHH
VRRKVVELVKALAAEADSD
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]