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The map label for this gene is rzpD [H]

Identifier: 209400794

GI number: 209400794

Start: 3265662

End: 3266126

Strand: Reverse

Name: rzpD [H]

Synonym: ECH74115_3523

Alternate gene names: 209400794

Gene position: 3266126-3265662 (Counterclockwise)

Preceding gene: 209400311

Following gene: 209400316

Centisome position: 58.62

GC content: 53.33

Gene sequence:

>465_bases
ATGAACCGTGTTCTGTGTGTGGTGATTATTGTCCTGCTGGTAGCCTGTGGTGCGCTTAGTCTGGGGCTGAATCATTACCG
CGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATA
TGCAGCAGCGCCAGCGTGATGTTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAA
ACTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGTGAAGCCAC
CGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGA
GGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAG

Upstream 100 bases:

>100_bases
GTAATCGTCGGCATTTCATTTTTAGTCATGCTGGTTGCCATTTTCTTTTCCACCGCCTGGCGAGTCCTGACGTTATCGGG
ACTGGTGGGGTGAAAGAGAG

Downstream 100 bases:

>100_bases
AGTTGCCCATATCGATGGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAA
GTAATAAAACCGAGCAATCC

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MNRVLCVVIIVLLVACGALSLGLNHYRDNAITYKEQRDKKVSELELANATITDMQQRQRDVAALDARYSRELADARAENE
TLRADVAAGYRSLRINATCPGPVREATGTARVDNATGPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR

Sequences:

>Translated_154_residues
MNRVLCVVIIVLLVACGALSLGLNHYRDNAITYKEQRDKKVSELELANATITDMQQRQRDVAALDARYSRELADARAENE
TLRADVAAGYRSLRINATCPGPVREATGTARVDNATGPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
>Mature_154_residues
MNRVLCVVIIVLLVACGALSLGLNHYRDNAITYKEQRDKKVSELELANATITDMQQRQRDVAALDARYSRELADARAENE
TLRADVAAGYRSLRINATCPGPVREATGTARVDNATGPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=154, Percent_Identity=69.4805194805195, Blast_Score=207, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17317; Mature: 17317

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVLCVVIIVLLVACGALSLGLNHYRDNAITYKEQRDKKVSELELANATITDMQQRQRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
VAALDARYSRELADARAENETLRADVAAGYRSLRINATCPGPVREATGTARVDNATGPRL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHEEECCCCCCCHHHCCCCCCCCCCCCCCC
ADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRVLCVVIIVLLVACGALSLGLNHYRDNAITYKEQRDKKVSELELANATITDMQQRQRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
VAALDARYSRELADARAENETLRADVAAGYRSLRINATCPGPVREATGTARVDNATGPRL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHEEECCCCCCCHHHCCCCCCCCCCCCCCC
ADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]