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The map label for this gene is yccM [H]

Identifier: 209400665

GI number: 209400665

Start: 1235675

End: 1236748

Strand: Reverse

Name: yccM [H]

Synonym: ECH74115_1228

Alternate gene names: 209400665

Gene position: 1236748-1235675 (Counterclockwise)

Preceding gene: 209396858

Following gene: 209396768

Centisome position: 22.2

GC content: 48.79

Gene sequence:

>1074_bases
ATGGCAGAGAAAAAAAGAACCCGCTGGCAGCGGCGGCCAGGCACGACGGGCGGCAAATTACCGTGGAATGACTGGCACAA
TGCCACGACCTGGCGTAAAGCGACGCAATTATTGCTGTTGGCAATGAATATTTATATTGCCATCACGTTCTGGTATTGGG
TGCGCTATTACGAAACGGCAGGTAGTACGATATTTGTCGCCAGACCGGGAGGTATCGAAGGCTGGCTACCGATTGCCGGT
CTGATGAATCTGAAATATAGCCTTGCAACAGGTCAGTTACCGTCCGTCCACGCCGCCGCGATGCTGTTATTGGTCGCTTT
TATCGTCATCAGTCTATTACTCAAAAAGGCCTTTTGCTCATGGTTATGCCCGGTTGGTACGCTTTCTGAATTAATCGGCG
CTCTCGGTAACAAACTGTTTGGTCGGCAATGTGTCCTTCCCCGCTGGCTGGATATTCCTCTGCGCGGTGTAAAGTATTTG
CTGTTGAGTTTTTTTCTCTATATCGCGTTATTGATGCCTGCTCAGGCGATTCACTATTTTATGTTGTCGCCCTACAGCGT
GGTGATGGACGTTAAAATGCTCGATTTCTTTCGTCATATGGGGACCGCGACATTAATCAGCGTGACCGTTTTGCTGATTG
CCAGCCTGTTTATTCGCCATGCCTGGTGTCGTTATCTTTGCCCATATGGCGCGCTGATGGGCGTGGTTTCGCTATTATCG
CCGTTTAAGATTCGTCGCAATGCCGAAAGTTGTATCGATTGTGGCAAATGCGCAAAAAATTGCCCATCACGGATCCCGGT
CGATAAATTAATTCAGGTACGAACAGTGGAATGTACCGGCTGTATGACTTGCGTAGAGTCATGTCCGGTAGCCTCAACAT
TGACCTTTTCACTGCAAAAACCTGCGGCAAATAAAAAAGCCTTTGCGTTGTCTGGCTGGTTAATGACGCTACTGGTTCTG
GGGATTATGTTTACGGTGATTGGTTACGCAATGTATGCAGGAGTATGGCAAAGCCCGGTGCCGGAGGAATTGTACCGACG
CTTAATTCCGCAAGCGCCAATGATTGGTCACTAA

Upstream 100 bases:

>100_bases
TGAATAAGAAAGACCTGAACGCGATTTGAATCAATATCAGCCAGTTAAGAATAACTAGAATAGTGGCATCTGGTATGCAA
CTTAACGGACTGGCAAAATC

Downstream 100 bases:

>100_bases
ATTAGCAACAAGCGGAACATCACCTCGCACGGGGTGATGTTCACAAAATCACATTATTTTGATTTTGACATCATAACTTT
CAAGCCCGGTCATTTTTTCT

Product: 4Fe-4S binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MAEKKRTRWQRRPGTTGGKLPWNDWHNATTWRKATQLLLLAMNIYIAITFWYWVRYYETAGSTIFVARPGGIEGWLPIAG
LMNLKYSLATGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGALGNKLFGRQCVLPRWLDIPLRGVKYL
LLSFFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVL
GIMFTVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH

Sequences:

>Translated_357_residues
MAEKKRTRWQRRPGTTGGKLPWNDWHNATTWRKATQLLLLAMNIYIAITFWYWVRYYETAGSTIFVARPGGIEGWLPIAG
LMNLKYSLATGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGALGNKLFGRQCVLPRWLDIPLRGVKYL
LLSFFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVL
GIMFTVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
>Mature_356_residues
AEKKRTRWQRRPGTTGGKLPWNDWHNATTWRKATQLLLLAMNIYIAITFWYWVRYYETAGSTIFVARPGGIEGWLPIAGL
MNLKYSLATGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGALGNKLFGRQCVLPRWLDIPLRGVKYLL
LSFFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSP
FKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLG
IMFTVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=357, Percent_Identity=97.7591036414566, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI1788532, Length=296, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40033; Mature: 39901

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKKRTRWQRRPGTTGGKLPWNDWHNATTWRKATQLLLLAMNIYIAITFWYWVRYYETA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GSTIFVARPGGIEGWLPIAGLMNLKYSLATGQLPSVHAAAMLLLVAFIVISLLLKKAFCS
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLCPVGTLSELIGALGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFLYIALLMPAQAIHYF
HHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQK
HHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEHHHHHHHHHHHCCCHHHHEEEECC
PAANKKAFALSGWLMTLLVLGIMFTVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AEKKRTRWQRRPGTTGGKLPWNDWHNATTWRKATQLLLLAMNIYIAITFWYWVRYYETA
CCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GSTIFVARPGGIEGWLPIAGLMNLKYSLATGQLPSVHAAAMLLLVAFIVISLLLKKAFCS
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLCPVGTLSELIGALGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFLYIALLMPAQAIHYF
HHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQK
HHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEHHHHHHHHHHHCCCHHHHEEEECC
PAANKKAFALSGWLMTLLVLGIMFTVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]