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The map label for this gene is rzpD [H]

Identifier: 209400480

GI number: 209400480

Start: 905880

End: 906347

Strand: Direct

Name: rzpD [H]

Synonym: ECH74115_0893

Alternate gene names: 209400480

Gene position: 905880-906347 (Clockwise)

Preceding gene: 209399665

Following gene: 209400716

Centisome position: 16.26

GC content: 51.71

Gene sequence:

>468_bases
ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCAGTCATGGGCGGTTAATCATTACCG
TGATAACGCCATCGCCTATAAAGAACAGCGTGATAAAAAAGTCAGTGAGCTGAAGCAGGCGACCGCCACCATTACTGACA
TGCAGCAGCGCCAGCGTGCTGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTAAAAATGAT
GCTCTTCGGCGCAAGCTTGATAATGGTGGTCGGGTGTTCGTCAAAGGAAAATGCCCTGTGCCATCCTCAGACGAAACCTC
CAGCGCCTCCGGCATGGGCAATGATGCCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACG
GAATTATCCGCGACCAAACAGCACTGAGAACGCTTCAGGAATACATCAGGACGCAATGCCTTCGATGA

Upstream 100 bases:

>100_bases
GTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGCGAGATTGAGCGTGAA
GTCTGTTTGTGGGGGCAACA

Downstream 100 bases:

>100_bases
TAGCGATAATTTTACTCATCATCCTTCACATCTGGCTCTGTAGACAGGGTGGTGCTCACTTCTGGAGTGAATCATGGTTA
AACATCTCATTGCTGATGCT

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSRVTAIISALVICIIVCQSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRAADALDAKYTKELADAKAKND
ALRRKLDNGGRVFVKGKCPVPSSDETSSASGMGNDATVELSPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR

Sequences:

>Translated_155_residues
MSRVTAIISALVICIIVCQSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRAADALDAKYTKELADAKAKND
ALRRKLDNGGRVFVKGKCPVPSSDETSSASGMGNDATVELSPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR
>Mature_154_residues
SRVTAIISALVICIIVCQSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRAADALDAKYTKELADAKAKNDA
LRRKLDNGGRVFVKGKCPVPSSDETSSASGMGNDATVELSPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=154, Percent_Identity=59.0909090909091, Blast_Score=139, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17098; Mature: 16967

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVTAIISALVICIIVCQSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADALDAKYTKELADAKAKNDALRRKLDNGGRVFVKGKCPVPSSDETSSASGMGNDATVEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
SPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRVTAIISALVICIIVCQSWAVNHYRDNAIAYKEQRDKKVSELKQATATITDMQQRQRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADALDAKYTKELADAKAKNDALRRKLDNGGRVFVKGKCPVPSSDETSSASGMGNDATVEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
SPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]