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The map label for this gene is ompL

Identifier: 209400419

GI number: 209400419

Start: 4962517

End: 4963209

Strand: Reverse

Name: ompL

Synonym: ECH74115_5321

Alternate gene names: 209400419

Gene position: 4963209-4962517 (Counterclockwise)

Preceding gene: 209399685

Following gene: 209400069

Centisome position: 89.07

GC content: 41.56

Gene sequence:

>693_bases
ATGAAAAATATTAATGCAATAATTTTATTATCTTCTCTGACCTCTGCCTCAGTATTCGCTGGCGCATACGTCGAAAACAG
GGAGGCATATAATCTCGCCTCCGATCAGGGCGAGGTTATGCTACGTGTGGGTTATAACTTCGATATGGGCGCGGGTATTA
TGTTAACCAATACCTACACCTTTCAGCGAGAAGATGAACTAAAACATGGATATAACGAAATCGAAGGTTGGTATCCGTTA
TTTAAACCAACCGATAAATTAACCATCCAGCCCGGTGGCTTAATTAATGATAAGAGTATCGGTTCGGGTGGTGCTGTTTA
TCTGGATGTTAACTACAAATTTACTCCGTGGTTTAACCTGACAGTGCGCAACCGTTTTAACCATAATAACTACAGCTCAA
CCGATTTAAACGGTGATCTGGATAATAATGACAGCTACGAGATTGGCAACTACTGGAACTTTATTATTACCGATAAGTTC
TCATATACCTTTGAGCCGCATTATTTTTATAACATTAATGATTTCAATAGCGGCAATGGCACGAAGCATCACTGGGAAAT
CACTAACACCTTCCGTTACCGCATTAACGAGCACTGGCTGCCCTATATTGAATTGCGTTGGTTAGATCGCAACGTGGAAC
CGTACCACCGCGAGCAAAACCAGATTCGTATCGGGACGAAGTATTTCTTCTGA

Upstream 100 bases:

>100_bases
GACAGAAGAAAAAACGGCTTCCGTAACGTTATAAATGTCAATAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCCCTA
CGTTTAAAAATGGACTTATT

Downstream 100 bases:

>100_bases
TGTGAAACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGTACATC
CGGCCATTAATTAAGCTTCA

Product: outer membrane porin L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKNINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSGNGTKHHWEITNTFRYRINEHWLPYIELRWLDRNVEPYHREQNQIRIGTKYFF

Sequences:

>Translated_230_residues
MKNINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSGNGTKHHWEITNTFRYRINEHWLPYIELRWLDRNVEPYHREQNQIRIGTKYFF
>Mature_230_residues
MKNINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNINDFNSGNGTKHHWEITNTFRYRINEHWLPYIELRWLDRNVEPYHREQNQIRIGTKYFF

Specific function: Outer membrane channel protein that allows an efficient diffusion of low-molecular-weight solutes such as small sugars and tetraglycine. However, the specific substrate recognized by the ompL channel is unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. OmpL subfamily

Homologues:

Organism=Escherichia coli, GI1790307, Length=230, Percent_Identity=93.0434782608696, Blast_Score=446, Evalue=1e-127,
Organism=Escherichia coli, GI87082420, Length=230, Percent_Identity=24.7826086956522, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMPL_ECO57 (Q8X8F2)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D86075
- PIR:   E91228
- RefSeq:   NP_290500.2
- RefSeq:   NP_312824.2
- ProteinModelPortal:   Q8X8F2
- SMR:   Q8X8F2
- EnsemblBacteria:   EBESCT00000028755
- EnsemblBacteria:   EBESCT00000057083
- GeneID:   915088
- GeneID:   960284
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5411
- KEGG:   ecs:ECs4797
- GeneTree:   EBGT00050000008772
- HOGENOM:   HBG416663
- OMA:   KNGFIMK
- ProtClustDB:   PRK09980
- BioCyc:   ECOL83334:ECS4797-MONOMER
- InterPro:   IPR009331

Pfam domain/function: PF06178 KdgM

EC number: NA

Molecular weight: Translated: 27082; Mature: 27082

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNINDFNSGNG
EEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYIELRWLDRNVEPYHREQNQIRIGTKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKNINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRFNHNNYSSTDLNGDLDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNINDFNSGNG
EEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYIELRWLDRNVEPYHREQNQIRIGTKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796