Click here to switch to the map view.

The map label for this gene is ydhJ [H]

Identifier: 209400309

GI number: 209400309

Start: 2227285

End: 2228142

Strand: Direct

Name: ydhJ [H]

Synonym: ECH74115_2356

Alternate gene names: 209400309

Gene position: 2227285-2228142 (Clockwise)

Preceding gene: 209400892

Following gene: 209399364

Centisome position: 39.97

GC content: 50.23

Gene sequence:

>858_bases
ATGTCAATTAAAACAATTAAGTATTTCTCAACAATCATTGTAGCGGTAGTTGCGGTTCTTGCCGGATGGTGGCTGTGGAA
TTATTACATGCAATCTCCGTGGACACGCGACGGGAAAATACGCGCAGAACAGGTTTCTATCACCCCACAGGTGTCGGGAC
GTATTGTTGAGCTGAATATAAAAGACAACCAGCTGGTTAACGCGGGGGATCTTCTGCTCACGATCGATAAAACGCCCTTT
CAGATCGCCGAGCTGAATGCACAGGCTCAGCTGGCGAAAGCGCAATCTGACCTCGCAAAAGCCAATAACGAAGCGAATCG
TCGTCGTCATCTCTCACAAAATTTTATTTCTGCCGAAGAACTCGATACCGCTAACCTCAATGTTAAAGCGATGCAGGCCA
GTGTTGATGCCGCACAGGCGACGCTGAAACAGACACAATGGCAACTGGCGCAAACGGAAATTCGCGCCCCGGTGAGTGGA
TGGGTGACTAATCTCACTACCCGCATCGGCGATTACGCTGACACCGGGAAACCGCTGTTTGCCCTTGTCGACAGCCACTC
GTTTTACGTCATTGGTTATTTTGAAGAAACCAAGTTGCGCCATATCCGCGAAGGTGCACCAGCACAAATTACCCTCTATA
GTGATAACAAAACGTTACAGGGTCACGTTTCCAGTATCGGTCGGGCGATTTATGATCAGAGCGTTGAAAGTGACTCAAGC
CTTATTCCGGATGTGAAACCTAACGTCCCCTGGGTTCGTCTCGCCCAACGCGTTCCCGTCCGCTTTGCGCTGGATAAAGT
TCCAGGCGATGTCACGCTGGTGTCGGGCACCACCTGTAGCATTGCCGTAGGTCAATAA

Upstream 100 bases:

>100_bases
GGATCTACGCCGGTGACATCTGGCATCCCTTGTTAATGGATTTATCGCTGTTTGCGATTTGCGTTTGCCTTGCTCTGGCA
ATACTGATTGCGTGGTAACT

Downstream 100 bases:

>100_bases
TGAACGCATCGTCATGGTCCTTGCGCAATTTGCCCTGGTTCAGGGCCACGCTGGCGCAATGGCGTTATGCGTTACGCAAT
ACCATTGCCATGTGTCTGGC

Product: auxiliary transport protein, membrane fusion protein (MFP) family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPF
QIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSG
WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS
LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Sequences:

>Translated_285_residues
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPF
QIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSG
WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS
LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
>Mature_284_residues
SIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQ
IAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSGW
VTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSL
IPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=99.6491228070175, Blast_Score=583, Evalue=1e-168,
Organism=Escherichia coli, GI1789637, Length=282, Percent_Identity=40.4255319148936, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1790519, Length=293, Percent_Identity=33.7883959044369, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=27.6527331189711, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789041, Length=304, Percent_Identity=28.2894736842105, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082036, Length=136, Percent_Identity=33.8235294117647, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790012, Length=269, Percent_Identity=24.1635687732342, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790024, Length=254, Percent_Identity=24.0157480314961, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789929, Length=130, Percent_Identity=34.6153846153846, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31526; Mature: 31395

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE
CCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
LDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEE
ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS
EEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECC
>Mature Secondary Structure 
SIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE
CCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
LDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEE
ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSS
EEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
LIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]