Click here to switch to the map view.

The map label for this gene is ymdF [H]

Identifier: 209400055

GI number: 209400055

Start: 1591833

End: 1592015

Strand: Reverse

Name: ymdF [H]

Synonym: ECH74115_1648

Alternate gene names: 209400055

Gene position: 1592015-1591833 (Counterclockwise)

Preceding gene: 209400030

Following gene: 209399627

Centisome position: 28.57

GC content: 47.54

Gene sequence:

>183_bases
ATGACCGAACATCGTGGCGGTGCAGGTAATTTCGCTGAAGATCGACAAAAAGCTTCTGACGCTGGTCGTAAAGGCGGCCA
ACATAGTGGCGGTAATTTTAAAAACGATCCACAAAGAGCATCAGAAGCAGGGAAAAAAGGTGGTCAGAATAGCCATGGTG
GCGGCCGTAAATCTGACTCTTAA

Upstream 100 bases:

>100_bases
ACCAATCTCTTATTTGACACTTTCTTATTTGTTACTAGAGTTAATTGGGTGCTGACAAGGCACATGTTATTTACAATTTG
AAAATCAGAGGAGAAATGAT

Downstream 100 bases:

>100_bases
TTTATCACCCCCTACATTCGTGAATAACTGAAGCTAACTGCGAGCCTACGGGCTCGCAGTGAAAACTCTGGAGTGATTAT
GCAAATTAAATCTGTTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 59

Protein sequence:

>60_residues
MTEHRGGAGNFAEDRQKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGGRKSDS

Sequences:

>Translated_60_residues
MTEHRGGAGNFAEDRQKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGGRKSDS
>Mature_59_residues
TEHRGGAGNFAEDRQKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGGRKSDS

Specific function: Unknown

COG id: COG3729

COG function: function code R; General stress protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the con-10 family [H]

Homologues:

Organism=Escherichia coli, GI87081817, Length=53, Percent_Identity=83.0188679245283, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI87081862, Length=43, Percent_Identity=93.0232558139535, Blast_Score=83, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019626 [H]

Pfam domain/function: PF10685 KGG [H]

EC number: NA

Molecular weight: Translated: 6168; Mature: 6036

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEHRGGAGNFAEDRQKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGGRKSDS
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TEHRGGAGNFAEDRQKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGGRKSDS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]