Click here to switch to the map view.

The map label for this gene is dsrH [H]

Identifier: 209399822

GI number: 209399822

Start: 4297664

End: 4297951

Strand: Reverse

Name: dsrH [H]

Synonym: ECH74115_4652

Alternate gene names: 209399822

Gene position: 4297951-4297664 (Counterclockwise)

Preceding gene: 209400382

Following gene: 209395851

Centisome position: 77.13

GC content: 51.04

Gene sequence:

>288_bases
ATGCTGCACACGTTACATCGTTCACCCTGGCTGACGGATTTTGCTGCGCTGCTGCGTCTGCTCAGTGAAGGCGACGAACT
GCTATTATTGCAAGATGGCGTAACTGCCGCAGTTGACGGTAACCGCTACCTTGAAAGTCTGCGTAATGCCCCCATTAAGG
TCTATGCCCTGAACGAAGACCTTATTGCCCGCGGTTTGACTGGTCAAATTTCGAACGACATCATTCCCATTGACTATACT
GATTTCGTCAGACTTACGGTTAAGCACTCCGGCCAGATGGCCTGGTGA

Upstream 100 bases:

>100_bases
CCGCAGACCCCCTTTGTTGTCGAAGCCACGCCGCTCGAAGCAGATGCCTTACGCCGCGAACTCGCCAACTACGATGTTAT
TTTGAGGTTTTGAGGCGTTT

Downstream 100 bases:

>100_bases
TGGCGGGATCGTTGTATATTTCTTGACACCTTTTCGGCATCGCCCTAAAATTCGGCGTCCTCATATTGTGTGAGGACGTT
TTATTACGTGTTTACGAAGC

Product: sulfur transfer complex subunit TusB

Products: NA

Alternate protein names: tRNA 2-thiouridine synthesizing protein B [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYT
DFVRLTVKHSGQMAW

Sequences:

>Translated_95_residues
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYT
DFVRLTVKHSGQMAW
>Mature_95_residues
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYT
DFVRLTVKHSGQMAW

Specific function: Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions [H]

COG id: COG2168

COG function: function code P; Uncharacterized conserved protein involved in oxidation of intracellular sulfur

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dsrH/tusB family [H]

Homologues:

Organism=Escherichia coli, GI1789741, Length=95, Percent_Identity=96.8421052631579, Blast_Score=186, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007215 [H]

Pfam domain/function: PF04077 DsrH [H]

EC number: NA

Molecular weight: Translated: 10662; Mature: 10662

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNED
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECCHHHHHHHCCCCEEEEEECHH
LIARGLTGQISNDIIPIDYTDFVRLTVKHSGQMAW
HHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNED
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECCHHHHHHHCCCCEEEEEECHH
LIARGLTGQISNDIIPIDYTDFVRLTVKHSGQMAW
HHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA