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The map label for this gene is rnfC [H]

Identifier: 209399637

GI number: 209399637

Start: 2212845

End: 2215163

Strand: Direct

Name: rnfC [H]

Synonym: ECH74115_2341

Alternate gene names: 209399637

Gene position: 2212845-2215163 (Clockwise)

Preceding gene: 209397589

Following gene: 209398754

Centisome position: 39.71

GC content: 55.5

Gene sequence:

>2319_bases
ATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAC
CCAGTCCAACGGTACACCCCTGCGCCAGGTACCACTGGCGCAGCGTTTTGTCATTCCACTGAAACAGCATATTGGCGCTG
AAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCCGCTTACCCGTGGTCGCGGCAAAATGCTGCCT
GTTCACGCGCCCACCTCGGGTACCGTTACGGCTATTGCGCCCCACTCTACGGCTCATCCTTCAGCTTTAGCTGAATTAAG
CGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCACGAGACGGCTGGGCCGATTATCGCTCTCGCCGTCGCGAAG
AGTTAATCGAGCGCATTCATCAGTTTGGTGTTGCCGGGCTGGGTGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGC
GGCGGAGATAAGATTGAGACGTTGATTATCAACGCTGCTGAGTGCGAGCCATACATTACCGCCGATGACCGTTTGATGCA
GGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTG
AAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTCACGATATTTCTATGCGGGTGATTCCA
ACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATC
CGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCG
AGCGTGTCGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCAT
TTATTGAATGACGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGCGGCCCGCTAATGGGCTTTACCTTGCC
ATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAGCTTGGCGAACCACAGGAAG
AACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGCCGCAACAGTTGTACTGGTTCAGC
AAAGGTCAGCAACACGATAAAGCTACCACGCATAACATTGCCGACTGCATTGAATGTGGGGCTTGCGCGTGGGTTTGCCC
GAGCAATATTCCCCTGGTGCAATATTTCCGTCAGGAAAAAGCTGAAATTGCGGCTATTCGTCAGGAAGAAAAGCGCGCCG
CAGAAGCCAAAGCGCGTTTCGAAGCGCGCCAGGCTCGTCTGGAGCGCGAAAAAGCGGCTCGCCTTGAACGACATAAGAGC
GCAGCCGTTCAACCTGCAGCCAAAGATAAAGATGCGATTGCTGCCGCTCTGGCGCGGGTGAAAGAGAAACAGGCCCAGGC
TACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGC
AAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTACTGATCCACGTAAAACTGCCGTTGAA
GCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCAAATGCGGAACCAGAACAACAGGTCGATCCGCG
CAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAC
AACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCT
AATGCGGAACCAGAAGAACCGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCT
GGAACAGCAACAGGCTAATGCGGAACCAGAAGAACCGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTACCCGTG
CCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCA
GCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCAGAACCAGAAGAACAGGTTGATCCGCG
CAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGTTCAGGCCAAAAAAGCCGTCCAGCAAAAGGTTGTAAACGAGGACTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCG
TATCATTCCCGTGGAACACC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGC
AGCCGTGCCAGGAATCGCAG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISMRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVTDPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEPVDPRKAAVEAAIARAKARKLEQQQANAEPEEPVDPRKAAVEAAITRAKARKLEQQQANAEPEEQVDPRKAAVA
AAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAVQQKVVNED

Sequences:

>Translated_772_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISMRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVTDPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEPVDPRKAAVEAAIARAKARKLEQQQANAEPEEPVDPRKAAVEAAITRAKARKLEQQQANAEPEEQVDPRKAAVA
AAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAVQQKVVNED
>Mature_772_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISMRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVTDPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEPVDPRKAAVEAAIARAKARKLEQQQANAEPEEPVDPRKAAVEAAITRAKARKLEQQQANAEPEEQVDPRKAAVA
AAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAVQQKVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=715, Percent_Identity=98.1818181818182, Blast_Score=1269, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 83781; Mature: 83781

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISMRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
ELQQTNDAATVTDPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEPVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
RAKARKLEQQQANAEPEEPVDPRKAAVEAAITRAKARKLEQQQANAEPEEQVDPRKAAVA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH
AAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAVQQKVVNED
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISMRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
ELQQTNDAATVTDPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEPVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
RAKARKLEQQQANAEPEEPVDPRKAAVEAAITRAKARKLEQQQANAEPEEQVDPRKAAVA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH
AAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAVQQKVVNED
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA