| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
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The map label for this gene is 209399399
Identifier: 209399399
GI number: 209399399
Start: 5187726
End: 5188367
Strand: Direct
Name: 209399399
Synonym: ECH74115_5548
Alternate gene names: NA
Gene position: 5187726-5188367 (Clockwise)
Preceding gene: 209398975
Following gene: 209398005
Centisome position: 93.1
GC content: 37.07
Gene sequence:
>642_bases ATGCCTGTAGATTTAACGCCTTATATTTTATCTGGGGTTAGTTTTTTGTCTGACATTCCTCAAGAAACCCTGTCTGAGAT ACGTAATCAGACTATTCGTGGAGAAGCTCAAATAAGACTGGGTGAGTTGATGGTGTCAATACGACCTATGCAGGTAAATG GATATTTTATGGGAAGTCTTAACCAGGATGGTTTATCGAATGATAATATCCAGATTGGCCTTCAATATATAGAACATATT GAACGTACACTTAATCATGGTAGTTTGACAAGCCGTGAAGTTACAGTACTGCGTGAAATTGAGATGCTCGAAAATATGGA TTTGCTTTCTAACTACCAGTTAGAGGAGTTGTTAGATAAAATTGAAGTATGTGCATTTAATGTGGAGCATGCACAATTGC AAGTGCCAGAGAGCTTACGAACATGCCCTGTTACATTATGCGAACCAGAAGATGGGGTATTTATGAGGAATTCAATGAAT TCAAATGTTTGTATGTTGTATGATAAAATGGCATTAATACATCTTGTTAAAACAAGGGCGGCTCATCCTTTGAGCAGGGA GTCAATCGCAGTTTCAATGATTGTAGGAAGAGATAATTGTGCTTTTGACCTTGACAGAGGTAACTTCGTTTTAAAAAATT AA
Upstream 100 bases:
>100_bases AGCTTTTTGTTGTAAGTGATAATTAATGATATAAATATAGTTTTATGTGCTTTTGTTTTTTACTAAAGCAAAATTAAGTT ATTAAAATGGAGGGAGAGGA
Downstream 100 bases:
>100_bases GATAGCAATGGCGGGTTAACTTTTCGTAAAATGAAATTAATTCTCGGTACGACATGTAAAACGCGGCACCTCGTATGCAA GAACGTACTGCGGTTGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: T3SS Secreted Effector NleG-Like Protein; T3SS Effector; T3SS Secreted Effector NleI/NleG Homolog
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MPVDLTPYILSGVSFLSDIPQETLSEIRNQTIRGEAQIRLGELMVSIRPMQVNGYFMGSLNQDGLSNDNIQIGLQYIEHI ERTLNHGSLTSREVTVLREIEMLENMDLLSNYQLEELLDKIEVCAFNVEHAQLQVPESLRTCPVTLCEPEDGVFMRNSMN SNVCMLYDKMALIHLVKTRAAHPLSRESIAVSMIVGRDNCAFDLDRGNFVLKN
Sequences:
>Translated_213_residues MPVDLTPYILSGVSFLSDIPQETLSEIRNQTIRGEAQIRLGELMVSIRPMQVNGYFMGSLNQDGLSNDNIQIGLQYIEHI ERTLNHGSLTSREVTVLREIEMLENMDLLSNYQLEELLDKIEVCAFNVEHAQLQVPESLRTCPVTLCEPEDGVFMRNSMN SNVCMLYDKMALIHLVKTRAAHPLSRESIAVSMIVGRDNCAFDLDRGNFVLKN >Mature_212_residues PVDLTPYILSGVSFLSDIPQETLSEIRNQTIRGEAQIRLGELMVSIRPMQVNGYFMGSLNQDGLSNDNIQIGLQYIEHIE RTLNHGSLTSREVTVLREIEMLENMDLLSNYQLEELLDKIEVCAFNVEHAQLQVPESLRTCPVTLCEPEDGVFMRNSMNS NVCMLYDKMALIHLVKTRAAHPLSRESIAVSMIVGRDNCAFDLDRGNFVLKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24103; Mature: 23972
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVDLTPYILSGVSFLSDIPQETLSEIRNQTIRGEAQIRLGELMVSIRPMQVNGYFMGSL CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEEHEEEEEEEEEECCEEEECC NQDGLSNDNIQIGLQYIEHIERTLNHGSLTSREVTVLREIEMLENMDLLSNYQLEELLDK CCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHH IEVCAFNVEHAQLQVPESLRTCPVTLCEPEDGVFMRNSMNSNVCMLYDKMALIHLVKTRA HHHHEECCCHHEEECCHHHCCCCEEEECCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHC AHPLSRESIAVSMIVGRDNCAFDLDRGNFVLKN CCCCCCCCEEEEEEEECCCCEEEECCCCEEECC >Mature Secondary Structure PVDLTPYILSGVSFLSDIPQETLSEIRNQTIRGEAQIRLGELMVSIRPMQVNGYFMGSL CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEEEEEHEEEEEEEEEECCEEEECC NQDGLSNDNIQIGLQYIEHIERTLNHGSLTSREVTVLREIEMLENMDLLSNYQLEELLDK CCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHH IEVCAFNVEHAQLQVPESLRTCPVTLCEPEDGVFMRNSMNSNVCMLYDKMALIHLVKTRA HHHHEECCCHHEEECCHHHCCCCEEEECCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHC AHPLSRESIAVSMIVGRDNCAFDLDRGNFVLKN CCCCCCCCEEEEEEEECCCCEEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA