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The map label for this gene is yddM [H]

Identifier: 209399277

GI number: 209399277

Start: 1988241

End: 1988525

Strand: Reverse

Name: yddM [H]

Synonym: ECH74115_2089

Alternate gene names: 209399277

Gene position: 1988525-1988241 (Counterclockwise)

Preceding gene: 209396014

Following gene: 209398545

Centisome position: 35.69

GC content: 52.28

Gene sequence:

>285_bases
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTTAATGTCAGCCTGCGCGAGTT
TGCCAGAGCAATGGAAATTGCTCCCTCAACGGCAAGCCGATTGCTGACCGGAAAAGCAGCTTTGACGCCAGAAATGGCAA
TTAAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCTGCA
AAAACGGTGGATGTGTCGCGATTACGCCGTCTGGTTGCGCAATAA

Upstream 100 bases:

>100_bases
CTCTCCAACATGAAATGGCTAAATGGATTATTGTTGCGTAGGAAGGAACAATAATGATAGTGTTCCCAGAGAAGGAACGC
TACTGAGAGTAAAGACACTA

Downstream 100 bases:

>100_bases
AAAATGGCGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTAC
ACGTTCACTGCAATCTATTG

Product: addiction module antidote protein, HigA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAA
KTVDVSRLRRLVAQ

Sequences:

>Translated_94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAA
KTVDVSRLRRLVAQ
>Mature_94_residues
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAA
KTVDVSRLRRLVAQ

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693133, Length=94, Percent_Identity=97.8723404255319, Blast_Score=185, Evalue=4e-49,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10313; Mature: 10313

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHEEEEEEE
GSSPQMWLNLQNAWSLAEAAKTVDVSRLRRLVAQ
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI
CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHEEEEEEE
GSSPQMWLNLQNAWSLAEAAKTVDVSRLRRLVAQ
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]