| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
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The map label for this gene is fitA [H]
Identifier: 209399265
GI number: 209399265
Start: 4020476
End: 4022617
Strand: Direct
Name: fitA [H]
Synonym: ECH74115_4343
Alternate gene names: 209399265
Gene position: 4020476-4022617 (Clockwise)
Preceding gene: 209400805
Following gene: 209400811
Centisome position: 72.15
GC content: 48.18
Gene sequence:
>2142_bases ATGGCTAAGTTCACACCTTCATTCTCAGGAATCAAAGGTCGGGCGCTCTTTTCACTGCTCTTTGCAGCACCAATGATTCA TGCAACCGACACTGCAACGACCAAAGATGGCGAAACAATCACTGTTACAGCGGATGCAAATACCGCAACTGAGGCGACCG ATGGTTATCAACCTCTGAGCACTTCCACGGCGACATTAACCGATATGCCGATGCTGGATATCCCGCAGGTGGTCAATACG GTTAGCGATCAGGTTCTGGAAAATCAGAATGCAACGACGCTGGATGAAGCGCTTTATAACGTCAGTAACGTGGTACAGAC CAATACATTAGGCGGAACTCAGGACGCCTTTGTACGTCGTGGTTTTGGTGCTAACCGGGATGGCTCCATCATGACCAACG GCCTGCGAACTGTACTTCCTCGCAGTTTCAACGCCGCCACAGAACGTGTGGAAGTGCTAAAAGGTCCGGCCTCCACGCTG TATGGCATTCTCGATCCTGGTGGATTGATTAACGTCGTGACCAAGCGCCCGGAAAAAACATTCCATGGTTCTGTCTCAGC CACGTCCTCCAGTTTTGGCGGAGGCACTGGGCAACTTGATATCACAGGTCCCATTGAAGGCACTCAGCTGGCATACCGCC TGACGGGGGAAGTGCAGGATGAAGATTACTGGCGAAACTTCGGTAAAGAGCGCAGTACATTTATTGCCCCGTCACTCACC TGGTTTGGTGATAATGCAACAGTAACCATGCTCTATTCCCATCGGGACTATAAAACTCCGTTCGATCGTGGAACGATTTT CGACCTTACGACGAAACAGCCCGTAAACGTTGATCGAAAAATACGTTTTGACGAACCGTTTAATATTACAGATGGTCAGT CCGATCTGGCGCAACTCAACGCAGAATATCATCTCAATAGCCAGTGGACAGCGCGCTTTGATTACAGCTACAGCCAGGAT AAATACAGCGACAATCAGGCTCGCGTTACCGCGTATGATGCAACGACAGGAACGCTGACACGGCGTGTTGATGCAACTCA GGGATCTACCCAGCGTATGCATTCTACTCGTGCGGATCTGCAAGGGAATGTTGATATTGCTGGGTTCTATAATGAGATTC TGGGTGGGGTGTCATATGAATATTATGATCTTCTGCGCACAGATATGATTCGCTGTAAAAACGCTAAAGATTTCAATATC TACAACCCCGTTTATGGCAATACCAGCAAATGCACAACGGTTTCGGCGTCGGACAGTGATCAGACGATCAAACAGGAGAG CTACTCAGCTTATGCACAGGATGCGCTCTATCTGACCGATAACTGGATTGCCGTCGCCGGGATCCGCTATCAGTATTACA CGCAGTATGCGGGTAAAGGCCGTCCTTTTAATGTCAATACTGACAGCCGCGATGAACAATGGACGCCCAAACTGGGGTTA GTCTACAAACTGACGCCATCGGTATCCTTATTTGCTAATTATTCGCAAACATTTATGCCGCAATCGTCAATTGCCAGCTA CATCGGAGATCTTCCACCGGAATCATCTAATGCTTACGAAGTCGGGGCAAAATTCGAGCTGTTCGATGGTATAACCGCAG ATATTGCGCTGTTTGATATCCATAAACGTAACGTGTTGTATACCGAAAGTATTGGTGATGAAACCATCGCCAAAACGGCA GGCCGCGTTCGTTCAAGAGGGGTAGAAGTCGACCTTGCGGGAGCATTAACTGAAAACATTAATATCATTGCCAGCTACGG CTATACCGATGCTAAGGTTCTGGAAGATCCTGATTATGCAGGGAAACCATTGCCGAATGTTCCTCGTCATACCGGTTCGC TATTCCTGACCTATGACATTCATAACATGCCAGGCAATAACACACTGACGTTTGGCGGTGGTGGACATGGCGTAAGCCGT CGTTCGGCAACCAATGGGGCTGACTATTATCTGCCAGGCTATTTCGTTGCCGATGCCTTCGCCGCATACAAAATGAAATT GCAGTATCCGGTCACACTGCAATTAAACGTCAAAAACCTGTTTGATAAAACGTATTACACCTCTTCCATCGCCACAAATA ATCTGGGGAATCAGATTGGCGATCCGCGTGAAGTGCAATTCACGGTGAAAATGGAATTTTGA
Upstream 100 bases:
>100_bases ACATATCCGATGGTAAAATAACAAACGGATAGTGCTTAGTGAGCAACAAGAAACAATTTTCACTCACGACAATCCGTGAG TTTTTGGGATAACAGACTAA
Downstream 100 bases:
>100_bases TCAAAAAAGCCCGGTATACACTTGTATACCGGGCTATGTTTTATTCTTCTGGCGGGAGGATTATCAGACCTCAATCTCCG CCATGTCGCCTTTCTCTTGC
Product: TonB-dependent outer membrane ferric coprogen receptor FitA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 712
Protein sequence:
>713_residues MAKFTPSFSGIKGRALFSLLFAAPMIHATDTATTKDGETITVTADANTATEATDGYQPLSTSTATLTDMPMLDIPQVVNT VSDQVLENQNATTLDEALYNVSNVVQTNTLGGTQDAFVRRGFGANRDGSIMTNGLRTVLPRSFNAATERVEVLKGPASTL YGILDPGGLINVVTKRPEKTFHGSVSATSSSFGGGTGQLDITGPIEGTQLAYRLTGEVQDEDYWRNFGKERSTFIAPSLT WFGDNATVTMLYSHRDYKTPFDRGTIFDLTTKQPVNVDRKIRFDEPFNITDGQSDLAQLNAEYHLNSQWTARFDYSYSQD KYSDNQARVTAYDATTGTLTRRVDATQGSTQRMHSTRADLQGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNI YNPVYGNTSKCTTVSASDSDQTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNVNTDSRDEQWTPKLGL VYKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKFELFDGITADIALFDIHKRNVLYTESIGDETIAKTA GRVRSRGVEVDLAGALTENINIIASYGYTDAKVLEDPDYAGKPLPNVPRHTGSLFLTYDIHNMPGNNTLTFGGGGHGVSR RSATNGADYYLPGYFVADAFAAYKMKLQYPVTLQLNVKNLFDKTYYTSSIATNNLGNQIGDPREVQFTVKMEF
Sequences:
>Translated_713_residues MAKFTPSFSGIKGRALFSLLFAAPMIHATDTATTKDGETITVTADANTATEATDGYQPLSTSTATLTDMPMLDIPQVVNT VSDQVLENQNATTLDEALYNVSNVVQTNTLGGTQDAFVRRGFGANRDGSIMTNGLRTVLPRSFNAATERVEVLKGPASTL YGILDPGGLINVVTKRPEKTFHGSVSATSSSFGGGTGQLDITGPIEGTQLAYRLTGEVQDEDYWRNFGKERSTFIAPSLT WFGDNATVTMLYSHRDYKTPFDRGTIFDLTTKQPVNVDRKIRFDEPFNITDGQSDLAQLNAEYHLNSQWTARFDYSYSQD KYSDNQARVTAYDATTGTLTRRVDATQGSTQRMHSTRADLQGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNI YNPVYGNTSKCTTVSASDSDQTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNVNTDSRDEQWTPKLGL VYKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKFELFDGITADIALFDIHKRNVLYTESIGDETIAKTA GRVRSRGVEVDLAGALTENINIIASYGYTDAKVLEDPDYAGKPLPNVPRHTGSLFLTYDIHNMPGNNTLTFGGGGHGVSR RSATNGADYYLPGYFVADAFAAYKMKLQYPVTLQLNVKNLFDKTYYTSSIATNNLGNQIGDPREVQFTVKMEF >Mature_712_residues AKFTPSFSGIKGRALFSLLFAAPMIHATDTATTKDGETITVTADANTATEATDGYQPLSTSTATLTDMPMLDIPQVVNTV SDQVLENQNATTLDEALYNVSNVVQTNTLGGTQDAFVRRGFGANRDGSIMTNGLRTVLPRSFNAATERVEVLKGPASTLY GILDPGGLINVVTKRPEKTFHGSVSATSSSFGGGTGQLDITGPIEGTQLAYRLTGEVQDEDYWRNFGKERSTFIAPSLTW FGDNATVTMLYSHRDYKTPFDRGTIFDLTTKQPVNVDRKIRFDEPFNITDGQSDLAQLNAEYHLNSQWTARFDYSYSQDK YSDNQARVTAYDATTGTLTRRVDATQGSTQRMHSTRADLQGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNIY NPVYGNTSKCTTVSASDSDQTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNVNTDSRDEQWTPKLGLV YKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKFELFDGITADIALFDIHKRNVLYTESIGDETIAKTAG RVRSRGVEVDLAGALTENINIIASYGYTDAKVLEDPDYAGKPLPNVPRHTGSLFLTYDIHNMPGNNTLTFGGGGHGVSRR SATNGADYYLPGYFVADAFAAYKMKLQYPVTLQLNVKNLFDKTYYTSSIATNNLGNQIGDPREVQFTVKMEF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=737, Percent_Identity=27.0013568521031, Blast_Score=161, Evalue=2e-40, Organism=Escherichia coli, GI1787344, Length=753, Percent_Identity=25.6308100929615, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1790743, Length=323, Percent_Identity=28.4829721362229, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1787024, Length=330, Percent_Identity=26.3636363636364, Blast_Score=78, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 78580; Mature: 78449
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKFTPSFSGIKGRALFSLLFAAPMIHATDTATTKDGETITVTADANTATEATDGYQPLS CCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC TSTATLTDMPMLDIPQVVNTVSDQVLENQNATTLDEALYNVSNVVQTNTLGGTQDAFVRR CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHC GFGANRDGSIMTNGLRTVLPRSFNAATERVEVLKGPASTLYGILDPGGLINVVTKRPEKT CCCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHCCCHHHEEEEECCCCEEEEEECCCCHH FHGSVSATSSSFGGGTGQLDITGPIEGTQLAYRLTGEVQDEDYWRNFGKERSTFIAPSLT HCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHCCCCCCEEECCEEE WFGDNATVTMLYSHRDYKTPFDRGTIFDLTTKQPVNVDRKIRFDEPFNITDGQSDLAQLN EECCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHCC AEYHLNSQWTARFDYSYSQDKYSDNQARVTAYDATTGTLTRRVDATQGSTQRMHSTRADL CEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCC QGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNIYNPVYGNTSKCTTVSASDSD CCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC QTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNVNTDSRDEQWTPKLGL HHHHHHHHHHHHCCEEEEECCEEEEEEEEEEEEEHHCCCCCCEECCCCCCCCCCCCCCCE VYKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKFELFDGITADIALFDI EEEECCCEEEEECCHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEECCCCEEEEEEEEE HKRNVLYTESIGDETIAKTAGRVRSRGVEVDLAGALTENINIIASYGYTDAKVLEDPDYA ECCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCEEECCCCCC GKPLPNVPRHTGSLFLTYDIHNMPGNNTLTFGGGGHGVSRRSATNGADYYLPGYFVADAF CCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHH AAYKMKLQYPVTLQLNVKNLFDKTYYTSSIATNNLGNQIGDPREVQFTVKMEF EEEEEEEECCEEEEEEHHHHHHHHEEECHHHCCCCCHHCCCCCEEEEEEEECC >Mature Secondary Structure AKFTPSFSGIKGRALFSLLFAAPMIHATDTATTKDGETITVTADANTATEATDGYQPLS CCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC TSTATLTDMPMLDIPQVVNTVSDQVLENQNATTLDEALYNVSNVVQTNTLGGTQDAFVRR CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHC GFGANRDGSIMTNGLRTVLPRSFNAATERVEVLKGPASTLYGILDPGGLINVVTKRPEKT CCCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHCCCHHHEEEEECCCCEEEEEECCCCHH FHGSVSATSSSFGGGTGQLDITGPIEGTQLAYRLTGEVQDEDYWRNFGKERSTFIAPSLT HCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHCCCCCCEEECCEEE WFGDNATVTMLYSHRDYKTPFDRGTIFDLTTKQPVNVDRKIRFDEPFNITDGQSDLAQLN EECCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHCC AEYHLNSQWTARFDYSYSQDKYSDNQARVTAYDATTGTLTRRVDATQGSTQRMHSTRADL CEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCC QGNVDIAGFYNEILGGVSYEYYDLLRTDMIRCKNAKDFNIYNPVYGNTSKCTTVSASDSD CCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC QTIKQESYSAYAQDALYLTDNWIAVAGIRYQYYTQYAGKGRPFNVNTDSRDEQWTPKLGL HHHHHHHHHHHHCCEEEEECCEEEEEEEEEEEEEHHCCCCCCEECCCCCCCCCCCCCCCE VYKLTPSVSLFANYSQTFMPQSSIASYIGDLPPESSNAYEVGAKFELFDGITADIALFDI EEEECCCEEEEECCHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEECCCCEEEEEEEEE HKRNVLYTESIGDETIAKTAGRVRSRGVEVDLAGALTENINIIASYGYTDAKVLEDPDYA ECCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCEEECCCCCC GKPLPNVPRHTGSLFLTYDIHNMPGNNTLTFGGGGHGVSRRSATNGADYYLPGYFVADAF CCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHH AAYKMKLQYPVTLQLNVKNLFDKTYYTSSIATNNLGNQIGDPREVQFTVKMEF EEEEEEEECCEEEEEEHHHHHHHHEEECHHHCCCCCHHCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]