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The map label for this gene is yeaM [H]

Identifier: 209399087

GI number: 209399087

Start: 2382654

End: 2383463

Strand: Reverse

Name: yeaM [H]

Synonym: ECH74115_2513

Alternate gene names: 209399087

Gene position: 2383463-2382654 (Counterclockwise)

Preceding gene: 209398179

Following gene: 209400292

Centisome position: 42.78

GC content: 50.0

Gene sequence:

>810_bases
TTGAATCTCAATGGCTATGAACCCGACCGACACCATGAAGCCGCGGTCGCATTTTGTATTCACGCCGGAACGGATGAGTT
AACCAGTCCTGTACATCAGCACCGCAAAGGACAGCTGATACTGGCGCTACATGGTGCAATTACCTGTACGGTGGAAAATG
CTTTGTGGATGGTGCCGCCACAATATGCGGTTTGGATACCGGGCGGGGTGGAACATAGCAATCAAGTGACAGCTAACGCT
GAACTCTGTTTTCTGTTTATCGAACCCAGCGCAGTGACAATGCCGACAACATGTTACACATTGAAAATATCGCCCTTATG
CCGGGAATTAATTTTAACTCTGGCAAACAGGACGACGACTCAGCGTGCTGAGCCGATGACCCGCAGATTAATTCAGGTCC
TGTTTGATGAACTCCCTCAGCAGCCACAACAACAGCTGCACCTACCCGTTTCTTCTCATCCTAAAATCCGCGCGATGGTG
GAGATGATGGCGAAAGAGCCCGTCGAGTGGGGGGCATTGGGGCAATGGGCTGGCTTTTTTGCGATGAGTGAACGCAATCT
TGCCCGACTGATAGTAAAAGAGACGGGGTTGAGTTTTCGCCAGTGGCGACAGCAGTTACAGCTGATTATGGCGCTTCAGG
GATTAGTGAAAGGCGATACTGTACAGAAAGTTGCTCATACGCTGGGGTATGATTCAACAACGGCCTTTATTACTATGTTT
AAGAAAGGCCTGGGGCAAACGCCAGGCCGATATATTGCGGGATTAACTACTGTTTCCCCACAATCAGCGAAACCAGACCC
GTGGCAATAA

Upstream 100 bases:

>100_bases
CATTGTTACAAACGAGGCTGTACCTTACCGTTTTTATTGTTATGTTGAATCAAGCTAAAATGACAAATTATCGCTAAATT
CGGACAAAATGATGCACAGG

Downstream 100 bases:

>100_bases
GCGGGCCAACCGGTACGCCGCGAAACAGCGCTACGCCTAAAACAGTGCCCACCAGCAGCCCAGCAACCAGTTGCGGCTGG
CTGCCCATTAACGTCACGCC

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANA
ELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRAMV
EMMAKEPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMF
KKGLGQTPGRYIAGLTTVSPQSAKPDPWQ

Sequences:

>Translated_269_residues
MNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANA
ELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRAMV
EMMAKEPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMF
KKGLGQTPGRYIAGLTTVSPQSAKPDPWQ
>Mature_269_residues
MNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANA
ELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRAMV
EMMAKEPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMF
KKGLGQTPGRYIAGLTTVSPQSAKPDPWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=269, Percent_Identity=97.7695167286245, Blast_Score=514, Evalue=1e-147,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30049; Mature: 30049

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPP
CCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEEECCC
QYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTT
CEEEECCCCCCCCCEEEECCEEEEEEECCCCEECCCEEEEEEECHHHHHHHHHHHCCCCH
QRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRAMVEMMAKEPVEWGALGQWAGFF
HHCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
AMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMF
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
KKGLGQTPGRYIAGLTTVSPQSAKPDPWQ
HHHCCCCCCHHEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPP
CCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEEECCC
QYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTT
CEEEECCCCCCCCCEEEECCEEEEEEECCCCEECCCEEEEEEECHHHHHHHHHHHCCCCH
QRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRAMVEMMAKEPVEWGALGQWAGFF
HHCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
AMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMF
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
KKGLGQTPGRYIAGLTTVSPQSAKPDPWQ
HHHCCCCCCHHEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]