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The map label for this gene is yhdY [H]

Identifier: 209398401

GI number: 209398401

Start: 4258097

End: 4259185

Strand: Direct

Name: yhdY [H]

Synonym: ECH74115_4589

Alternate gene names: 209398401

Gene position: 4258097-4259185 (Clockwise)

Preceding gene: 209398125

Following gene: 209399291

Centisome position: 76.42

GC content: 52.34

Gene sequence:

>1089_bases
ATGACAAAAGTATTGCTGTCTCATCCCTCGCGCCCGGCGAGCCATAACTCAAGCCGCGCGATGGTGTGGGTGCGAAAAAA
TCTGTTCTCCAGCTGGAGCAATAGCCTGCTGACTATTGGCTGCATATGGTTGATGTGGGAACTGATCCCACCGTTGCTGA
ACTGGGCATTTTTGCAGGCTAACTGGGTTGGCTCAACGCGTGCCGACTGCACAAAAGCCGGTGCCTGTTGGGTCTTCATC
CACGAACGATTTGGTCAGTTTATGTATGGACTTTACCCACACGACCAACGCTGGCGAATTAACTTGGCATTACTGATTGG
CCTTGTGTCAATCGCACCAATGTTCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGTCTGGGCAGTGATTTACC
CACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACG
CTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCA
TATGCCGATTGTGCGCATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGTTTATGT
CTTCGGTCATGCTGCCTTTGTTTATGGCAGAAGGCACCAGTATCGACAAACTGCTCCGCGCGCTGGTTGGCGTGATCCTG
TTTCAGTCAGCATATGTTGCGGAAGTCGTGCGAGGTGGATTACAGGCGCTGCCTAAAGGGCAATATGAAGCGGCAGAGTC
GCTGGCGTTGGGTTACTGGAAAACTCAGGGGCTGGTTATTCTGCCACAGGCGTTGAAGCTGGTAATTCCTGGGCTGGTAA
ATACCATCATCGCACTCTTCAAAGATACCAGCCTGGTGATCATTATCGGGTTGTTCGATCTTTTCAGTAGCGTTCAGCAA
GCAACCGTTGATCCCGCCTGGTTGGGTATGTCGACGGAAGGGTATGTTTTCGCCGCGCTGATCTACTGGATCTTCTGTTT
CAGCATGTCGCGCTATAGCCTGAACCGCCCCGGAAATCCTGGAGACTAA

Upstream 100 bases:

>100_bases
CATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATCGCGATCG
TGGAACGCTAAGGAGTCATG

Downstream 100 bases:

>100_bases
ACTCCCTGAGAAAGAGGTAAACAGGATGACTAAAAATACTCGTTTTTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGG
TTCTGGAAAGTCAGGATGAA

Product: general L-amino acid transport system permease protein AapM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MTKVLLSHPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFI
HERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFALERVETRQWGGLT
LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLLRALVGVIL
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQ
ATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSLNRPGNPGD

Sequences:

>Translated_362_residues
MTKVLLSHPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFI
HERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFALERVETRQWGGLT
LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLLRALVGVIL
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQ
ATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSLNRPGNPGD
>Mature_361_residues
TKVLLSHPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIH
ERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFALERVETRQWGGLTL
TLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLLRALVGVILF
QSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQA
TVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSLNRPGNPGD

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=363, Percent_Identity=97.2451790633609, Blast_Score=701, Evalue=0.0,
Organism=Escherichia coli, GI1786873, Length=199, Percent_Identity=31.1557788944724, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788226, Length=194, Percent_Identity=39.6907216494845, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787030, Length=163, Percent_Identity=35.5828220858896, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI48994930, Length=111, Percent_Identity=35.1351351351351, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788645, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786874, Length=131, Percent_Identity=29.0076335877863, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787087, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40695; Mature: 40564

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLLSHPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA
CCCEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEE
NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP
CCCCCCCCCHHCCCCCEEEHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCC
HRGRYIAVWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILL
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLLRALVGVIL
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCEEEEHHHHHHHHHHHHHHHHHHH
KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSLNRPGNP
CCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GD
CC
>Mature Secondary Structure 
TKVLLSHPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA
CCEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEE
NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP
CCCCCCCCCHHCCCCCEEEHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCC
HRGRYIAVWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILL
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLLRALVGVIL
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCEEEEHHHHHHHHHHHHHHHHHHH
KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSLNRPGNP
CCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]