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The map label for this gene is ygcO [H]

Identifier: 209398115

GI number: 209398115

Start: 3718434

End: 3718694

Strand: Direct

Name: ygcO [H]

Synonym: ECH74115_4022

Alternate gene names: 209398115

Gene position: 3718434-3718694 (Clockwise)

Preceding gene: 209397050

Following gene: 209396212

Centisome position: 66.73

GC content: 55.17

Gene sequence:

>261_bases
ATGTCTGTAGCCCGTAATCTCTGGCGCGCTGCTGATGCGCCGCACATTGTTCCGGCTGACTCCGTTGAGCGTCAGATGGT
ACAACGGTTGATTAACGCCTGTCCGGTAGGTCTTTTTTCGCTCACACCGGAAGGTGACTTACGCGTTGATTATCACGGCT
GCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCCACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGC
ATCACCTACCGATTTGGATAA

Upstream 100 bases:

>100_bases
AGGGTGATAAACCTGTTCCACCGCTGCGCCAGTTACTCTGGCGTCATTTACGTCGTCATGGCTTGTGGAATCTGGCGGGC
GATGTTATCAGGAGTGTTCG

Downstream 100 bases:

>100_bases
ATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCC
TGCAACTGGCCATCGATTCT

Product: putative ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFG
ITYRFG

Sequences:

>Translated_86_residues
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFG
ITYRFG
>Mature_85_residues
SVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGI
TYRFG

Specific function: Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with ygcN, ygcQ and ygcR [H]

COG id: COG2440

COG function: function code C; Ferredoxin-like protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI87082156, Length=86, Percent_Identity=89.5348837209302, Blast_Score=167, Evalue=1e-43,
Organism=Escherichia coli, GI1786228, Length=73, Percent_Identity=47.945205479452, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1787992, Length=73, Percent_Identity=45.2054794520548, Blast_Score=83, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR012206 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9657; Mature: 9526

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTC
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCCE
RLLCDESTLQQWRYPPSGFGITYRFG
EEEECCHHHHHCCCCCCCCCEEEECC
>Mature Secondary Structure 
SVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTC
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCCE
RLLCDESTLQQWRYPPSGFGITYRFG
EEEECCHHHHHCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]