BacMap

Definition	Escherichia coli O157:H7 str. EC4115, complete genome.
Accession	NC_011353
Length	5,572,075

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The map label for this gene is ynjD [H]

Identifier: 209397978

GI number: 209397978

Start: 2344553

End: 2345206

Strand: Direct

Name: ynjD [H]

Synonym: ECH74115_2475

Alternate gene names: 209397978

Gene position: 2344553-2345206 (Clockwise)

Preceding gene: 209399526

Following gene: 209397120

Centisome position: 42.08

GC content: 50.61

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGTTGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGG
TGACATTGTCACGTTAATGGGGCCGTCTGGCTGTGGAAAATCCACTCTGTTTTCATGGATGATTGGTGCACTGGCCGGAC
AGTTTTCTTGTACAGGTGAGCTATGGCTCAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTTCAGGATGCACTGTTATTTGACCAGTTCAGTGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAGGG
GAATACCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGACGGAGCTTTCCATCAGGATCCTGCTACTT
TGTCTGGCGGTCAGCGAGCGCGCGTTGCTCTGCTTCGCGCCCTTCTCGCTCAGCCAAAAGCGTTGCTACTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGAACTGGCGATCCCCGT
CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCTGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKNVSLRLPESCLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNTRRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKNVSLRLPESCLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNTRRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKNVSLRLPESCLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNTRRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=158, Percent_Identity=32.9113924050633, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27262624, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27262626, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27881501, Length=181, Percent_Identity=27.6243093922652, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI30795238, Length=181, Percent_Identity=27.6243093922652, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592978, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592956, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592971, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592898, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592915, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592964, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=97.2350230414747, Blast_Score=426, Evalue=1e-121,
Organism=Escherichia coli, GI1790467, Length=191, Percent_Identity=36.1256544502618, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=35.2040816326531, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=37.2881355932203, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788761, Length=201, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082267, Length=182, Percent_Identity=34.0659340659341, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=34.010152284264, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=35.9116022099448, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=31.390134529148, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.5177664974619, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1787370, Length=186, Percent_Identity=33.8709677419355, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=34.2391304347826, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789593, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=32.3383084577114, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=32.3809523809524, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786872, Length=199, Percent_Identity=35.678391959799, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=35.0877192982456, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.8245614035088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=32.967032967033, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789032, Length=187, Percent_Identity=30.4812834224599, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=32.8358208955224, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789962, Length=190, Percent_Identity=32.6315789473684, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.5024154589372, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.5945945945946, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788506, Length=195, Percent_Identity=31.7948717948718, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789586, Length=205, Percent_Identity=31.7073170731707, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=33.160621761658, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=33.6683417085427, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=31.0185185185185, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.9859154929577, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789891, Length=193, Percent_Identity=31.6062176165803, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI48994883, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.8518518518519, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787500, Length=186, Percent_Identity=27.9569892473118, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=30.8823529411765, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=193, Percent_Identity=30.5699481865285, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789963, Length=189, Percent_Identity=29.1005291005291, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=31.0344827586207, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=30.622009569378, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786981, Length=195, Percent_Identity=29.7435897435897, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786803, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.8457711442786, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=28.3720930232558, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=172, Percent_Identity=30.2325581395349, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=35.7575757575758, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17541710, Length=176, Percent_Identity=35.2272727272727, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17567269, Length=177, Percent_Identity=34.4632768361582, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=160, Percent_Identity=34.375, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=158, Percent_Identity=34.1772151898734, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=32.9268292682927, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=174, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=168, Percent_Identity=30.3571428571429, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.7919075144509, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=163, Percent_Identity=32.5153374233129, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=224, Percent_Identity=28.125, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=175, Percent_Identity=32.5714285714286, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=233, Percent_Identity=27.8969957081545, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=174, Percent_Identity=35.0574712643678, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI19920532, Length=157, Percent_Identity=33.7579617834395, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580930, Length=157, Percent_Identity=33.7579617834395, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=33.6898395721925, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=33.6898395721925, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653245, Length=162, Percent_Identity=32.0987654320988, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=32.0987654320988, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357907, Length=170, Percent_Identity=32.3529411764706, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85725262, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726357, Length=161, Percent_Identity=31.6770186335404, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17647959, Length=160, Percent_Identity=31.875, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581191, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581189, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581193, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581195, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=157, Percent_Identity=33.1210191082803, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23984; Mature: 23984

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKNVSLRLPESCLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCCCCCHHHEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNTRRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKNVSLRLPESCLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCCCCCHHHEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNTRRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]