Click here to switch to the map view.

The map label for this gene is slp [H]

Identifier: 209397301

GI number: 209397301

Start: 2398074

End: 2398655

Strand: Reverse

Name: slp [H]

Synonym: ECH74115_2533

Alternate gene names: 209397301

Gene position: 2398655-2398074 (Counterclockwise)

Preceding gene: 209400525

Following gene: 209397101

Centisome position: 43.05

GC content: 54.3

Gene sequence:

>582_bases
ATGGCGGTTCAAAAGAATGTTATCAAAGGCATACTGGCAGGTACGTTTGCGCTAATGCTGAGCGGTTGTGTCACTGTGCC
GGACGCCATTAAAGGCAGCAGTCCCACGCCGCAACAAGATTTAGTTCGGGTGATGAGTGCGCCGCAGCTGTACGTTGGTC
AGGAGGCACGCTTTGGTGGCAAAGTGGTTGCGGTACAAAACCAGCAAGGGAAAACCCGCCTGGAAATTGCTACCGTACCG
CTGGACAGCGGAGCCAGACCGACGCTGGGAGAACCTTCTCGCGGTCGCATTTATGCCGATGTGAACGGTTTTCTGGACCC
GGTGGATTTCCGTGGACAACTGGTTACGGTAGTCGGGCCAATCACTGGTGCGGTTGACGGAAAAATCGGCAACACGCCCT
ATAAATTTATGGTGATGCAGGCAACAGGTTACAAACGTTGGCATTTAACCCAGCAGGTGATTATGCCGCCTCAGCCGATT
GATCCCTGGTTTTATGGCGGTCGTGGCTGGCCCTATGGCCACGGCGGATGGGGCTGGTATAATCCCGGCCCCGCGAGAGT
ACAAACAGTTGTAACTGAATAA

Upstream 100 bases:

>100_bases
TGCCGAACCGGTTTATTTACGTAACAACGTCGCATGGAAGAAACTTCCGGGCAAAGAATGAATCTTAAGAGTATGCCCTG
AGAAAAAAAGGAGTCGCATC

Downstream 100 bases:

>100_bases
TTGCTTGTTTTTAAAGAAAAAGAAACAGCGGCTGGTCCGCTGTTTCTGCATTCTTACGGTAAAGATAAAAATAAATAGTG
ACGCGCTTCGCAACCTTTTC

Product: outer membrane protein Slp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVP
LDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQATGYKRWHLTQQVIMPPQPI
DPWFYGGRGWPYGHGGWGWYNPGPARVQTVVTE

Sequences:

>Translated_193_residues
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVP
LDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQATGYKRWHLTQQVIMPPQPI
DPWFYGGRGWPYGHGGWGWYNPGPARVQTVVTE
>Mature_192_residues
AVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPL
DSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQATGYKRWHLTQQVIMPPQPID
PWFYGGRGWPYGHGGWGWYNPGPARVQTVVTE

Specific function: Unknown

COG id: COG3065

COG function: function code M; Starvation-inducible outer membrane lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788108, Length=193, Percent_Identity=98.9637305699482, Blast_Score=386, Evalue=1e-109,
Organism=Escherichia coli, GI87082278, Length=175, Percent_Identity=41.7142857142857, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004658 [H]

Pfam domain/function: PF03843 Slp [H]

EC number: NA

Molecular weight: Translated: 20867; Mature: 20736

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCC
KVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGP
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEC
ITGAVDGKIGNTPYKFMVMQATGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGHGGWGWY
CCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCCEECCCCCCCCCCCCCCC
NPGPARVQTVVTE
CCCCCEEEEEECC
>Mature Secondary Structure 
AVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCC
KVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGP
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEC
ITGAVDGKIGNTPYKFMVMQATGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGHGGWGWY
CCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCCEECCCCCCCCCCCCCCC
NPGPARVQTVVTE
CCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]