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The map label for this gene is prpR [H]

Identifier: 209397236

GI number: 209397236

Start: 407436

End: 409022

Strand: Reverse

Name: prpR [H]

Synonym: ECH74115_0401

Alternate gene names: 209397236

Gene position: 409022-407436 (Counterclockwise)

Preceding gene: 209397539

Following gene: 209395748

Centisome position: 7.34

GC content: 55.26

Gene sequence:

>1587_bases
ATGGCACATCCACCACGGCTGAATGACGACAAACCGGTTATCTGGACGGTATCTGTAACGCGCTTATTCGAGCTGTTTCG
CGATATCAGCCTCGAGTTTGATCACCTGGCGAACATTACCCCTATTCAGCTTGGCTTTGAAAAAGCAGTGACCTACATCC
GCAAGAAACTGGCAAACGAACGCTGTGACGCCATCATCGCCGCTGGCTCTAACGGCGCGTACCTGAAAAGCCGCCTGTCA
GTGCCAGTTATTTTGATTAAACCGAGCGGCTACGATGTGTTACAGGCACTGGCAAAAGCCGGAAAACTCACCTCTTCTAT
CGGCGTTGTCACTTATCAGGAAACTATTCCGGCACTGGTGGCGTTTCAAAAAACCTTTAATTTGCGCCTCGATCAACGTA
GCTACATTACCGAAGAAGACGCACGCGGGCAGATTAACGAGCTAAAAGCTAACGGCACCGAAGCGGTGGTCGGCGCGGGG
CTGATTACCGATCTGGCAGAAGAAGCCGGAATGACCGGAATTTTTATCTATTCCGCCGCCACCGTGCGCCAGGCGTTCAG
CGATGCGCTGGATATGACGCGCATGTCGTTACGCCATAACACTCACGATGCCACCCGCAACGCCCTGCGTACTCGTTACG
TGCTGGGCGATATGCTCGGTCAATCACCACAGATGGAGCAGGTGCGGCAGACTATTTTGCTGTATGCCCGCTCCAGTGCG
GCGGTGTTGATTGAGGGGGAAACGGGGACGGGCAAAGAGCTGGCGGCCCAGGCAATTCATCGGGAATATTTTGCCCGCCA
CGATGCGCGACAGGGCAAAAAGTCGCATCCGTTTGTTGCCGTCAACTGCGGGGCGATTGCCGAATCGCTGCTGGAAGCGG
AGCTGTTTGGCTATGAGGAAGGGGCGTTTACCGGCTCGCGACGCGGAGGTCGCGCCGGGCTGTTCGAAATTGCCCACGGT
GGCACGCTGTTTCTGGATGAGATTGGCGAAATGCCGCTACCTTTGCAGACTCGCCTGTTACGGGTGCTGGAAGAAAAAGA
GGTCACCCGCGTCGGCGGGCATCAGCCTGTTCCGGTAGATGTACGGGTCATTAGCGCCACTCACTGCAATCTGGAAGAAG
ATATGCGGCAAGGGCAGTTTCGCCGTGATCTGTTTTATCGGCTGAGTATTTTGCGTCTGCAATTGCCACCACTGCGCGAG
CGGGTGGCAGATATTCTTCCGCTGGCGGAAAGCTTTTTGAAAGTGTCTCTGGCGGCGCTCTCCGCCCCATTTTCTGCCGC
ATTACGCCAGGGATTACAGGCAAGCGAAACCGTGCTGGTGCACTACGACTGGCCAGGTAATATTCGTGAACTGCGCAATA
TGATGGAGCGACTGGCGCTATTTTTAAGTGTGGAACCGACGCCGGATTTAACGCCGCAGTTTTTGCAGCTGCTACTGCCG
GAACTGGCGCGCGAGTCGGCGAAAATTCCCGCTCCACGCTTGCTGACACCACAACAGGCACTGGAGAAATTTAATGGCGA
TAAAACAGCAGCGGCGAATTATTTAGGCATCAGCCGGACGACGTTCTGGCGGCGGCTGAAAAGCTGA

Upstream 100 bases:

>100_bases
TTTCAGTTAACGTTTCAGGCAATGTTTCACCGCGTTTCATTGCAACAATTATGAAACAAGACTAAACCCAATATTCGGTA
TCTTAACTTTGCGGTGCGCT

Downstream 100 bases:

>100_bases
ACTGCCGAATGCAGCGCGAACGCTTTATCCGGCATAAATTTCAATAGATGATCACCGATAAACTTACGCATCGGGGATGT
TTACATAGGATTCAGAATTA

Product: propionate catabolism operon regulatory protein PrpR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 527

Protein sequence:

>528_residues
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLS
VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG
LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA
AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG
GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRE
RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP
ELARESAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS

Sequences:

>Translated_528_residues
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLS
VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG
LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA
AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG
GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRE
RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP
ELARESAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS
>Mature_527_residues
AHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSV
PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL
ITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA
VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG
TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRER
VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLPE
LARESAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS

Specific function: Involved in the transcriptional regulation of the propionate catabolism operon [H]

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1786524, Length=528, Percent_Identity=99.0530303030303, Blast_Score=1069, Evalue=0.0,
Organism=Escherichia coli, GI1788550, Length=338, Percent_Identity=42.603550295858, Blast_Score=234, Evalue=7e-63,
Organism=Escherichia coli, GI1790299, Length=345, Percent_Identity=43.1884057971014, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1790437, Length=329, Percent_Identity=43.161094224924, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI87082117, Length=355, Percent_Identity=42.5352112676056, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI1789233, Length=330, Percent_Identity=38.7878787878788, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1788905, Length=378, Percent_Identity=39.1534391534392, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI1789087, Length=332, Percent_Identity=38.2530120481928, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87082152, Length=246, Percent_Identity=45.5284552845528, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI87081872, Length=241, Percent_Identity=43.5684647302905, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI1787583, Length=237, Percent_Identity=44.3037974683544, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081858, Length=303, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1789828, Length=239, Percent_Identity=35.9832635983264, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR012704
- InterPro:   IPR010524 [H]

Pfam domain/function: PF02954 HTH_8; PF06506 PrpR_N; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 58630; Mature: 58499

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4 ; PS00134 TRYPSIN_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE
CCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV
HCCEEEEECCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHCCEEEEHHHHHHHH
AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA
HHHHHHCCEECCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHH
TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD
CCCCCCCCCCCCCEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL
EEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP
CCCHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH
ELARESAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS
HHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
AHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE
CCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV
HCCEEEEECCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHCCEEEEHHHHHHHH
AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA
HHHHHHCCEECCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHH
TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD
CCCCCCCCCCCCCEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL
EEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP
CCCHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH
ELARESAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS
HHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]