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The map label for this gene is yddB [H]

Identifier: 209397189

GI number: 209397189

Start: 2011092

End: 2013464

Strand: Reverse

Name: yddB [H]

Synonym: ECH74115_2108

Alternate gene names: 209397189

Gene position: 2013464-2011092 (Counterclockwise)

Preceding gene: 209399273

Following gene: 209398793

Centisome position: 36.13

GC content: 46.02

Gene sequence:

>2373_bases
ATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTGATGTGGCGCAGGCCGTCGATGACAAAAACATGTACAT
GCATTTTTTTGAAGAGATGACGGTCTATGCTCCTGTCCCTGTACCCGTAAACGGCAACACGCATTACACCAGTGAAAGCA
TCGAGCGTTTACCGACCGGGAATGGCAATATCAGCGATCTGCTGAGAACCAACCCTGCGGTACGCATGGATTCAACGCAA
AGTACCTCGTTGAACCAGGGAGATATTCGCCCGGAGAAAATCTCTATTCACGGTGCGTCGCCCTATCAGAATGCCTATTT
GATTGACGGTATTAGTGCCACTAATAACCTGAACCCAGCGAATGAGTCCGATGCCAGTAGTGCAACCAATATTAGCGGGA
TGTCACAGGGGTATTATCTTGATGTCAGCTTACTGGACAATGTGACGCTTTATGACAGTTTTGTGCCGGTTGAATTCGGT
CGCTTCAATGGCGGGGTAATTGATGCAAAGTTCAAACGCTTCAACGCTGATGATAGCAGCGTGAAACTGGGTTATCGCAC
TACGCGTTCGGACTGGTTAACATCGCATATCAATGAGAATAACAAGAGCGCATTTAATCAAGGCTCTTCAGGAAGTACTT
ATTACTCCCCAGATTTTAAAAAGAACTTTTATACCTTGTCGTTTAATCAGGAACTCGCTGATAACTTTGGCGTTACCGCC
GGTTTATCGCGCCGCCAGTCTGATATCACCCGCGCGGATTATGTTTCGAATGACGGCATTGTCGCCGGTCGGGCACAGTA
TAAAAACGTTATCGATACTGCATTGAGCAAATTTACCTGGTTTGCCAGCGACCGCTTTACCCACGATTTAACCTTAAAAT
ATACCGGCTCCAGCCGTGATTATAATACCAGCACCTTCCCGCAGTCTGATCGCGAAATGGGTAATAAATCCTATGGTATG
GCATGGGATATGGATACGCAGCTCGCATGGGCCAAACTACGTACCACCGTTGGTTGGGATCATATTAGTGATTATACCCG
TCACGATCATGACATCTGGTACACCGAACTTTCATGTACATATGGTGATATTACAGGGCGTTGCACCCGTGGCGGATTAG
GACACATTTCCCAGGCTGTAGATAATTACACCTTCAAAACACGCCTGGACTGGCAAAAATTCGCCGTGGGTAATGTTTCG
CATCAACCCTACTTCGGCGCGGAATACATCTATTCCGATGCGTGGACTGAACGCCATAACCAGTCTGAATCCTATGTGAT
TAATGCTGCCGGAAAGAAAACTAACCATACCATTTACCATAAAGGTAAAGGCAGCCTGGGAATTGACAACTACACACTGT
ATATGGCGGATCGCATTAGCTGGCGTAATGTGTCATTAATGCCCGGCGTGCGGTATGACTATGACAACTATCTGTCAAAC
CACAATATCTCCCCGCGCTTTATGACGGAATGGGATATTTTTGCTGATCAAACCTCAATGATTACAGCAGGTTATAACCG
TTACTATGGCGGGAATATTCTTGATATGGGATTACGTGATATCCGCAATAGCTGGACGGAATCGGTATCAGGTAATAAAA
CCCTGACGCGTTATCAGGATTTGAAAACGCCTTATAACGATGAACTGGCAATGGGATTGCAGCAAAAAATCGGTAAGAAC
GTTATTGCGCGCGCAAACTATGTTTACCGTGAAGCGCATGATCAAATCAGCAAAAGCAGTCGTACCGACAGCGCGACTAA
AACCACCATTACTGAATATAACAACGACGGCAAAACCAAAACGCATTCGTTCAACCTCAGTTTTGAACTGGCCGAACCCC
TGCATATCAGCCAGGTAGATATTAACCCGCAAATTGTCTTTAGCTATATCAAGAGCAAGGGCAACTTGTCGTTAAACAAT
GGTTATGAGGAGAGCAATACCGGTGATAACCAGGTGGTTTATAACGGTAATCTTGTCTCTTACGATAGCGTTCCAGTGGC
AGATTTTAATAACCCATTAAAGATCTCCTTAAACATGGATTTCACGCATCAACCGAGCGGGTTGGTGTGGGCGAATACGC
TGGCCTGGCAAGAAGCGCGTAAAGCTCGCATTATCCTGGGTAAGACAAATGCGCAATACATCAGCGAATATTCAGATTAC
AAGCAGTATGTTGACGAAAAACTGGATAGCAGCCTGACCTGGGACACCCGCTTGTCCTGGACGCCACAATTTCTGAAACA
ACAAAACCTGACGATCAGTGCCGATATTCTCAATGTACTGGATAGCAAAACCGCGGTTGATACAACGAATACCGGTGTGG
CGACCTACGCCAGTGGCCGTACTTTCTGGCTTGATGTCAGCATGAAATTTTAA

Upstream 100 bases:

>100_bases
ACACATCAACCCGGTGTCTGGAACCTGGCCGATGATATTTGTGACATTAGCGCGGTTTTATAAAAACAATAAAAGCCCTG
CTGTACGGAGATATAAATAA

Downstream 100 bases:

>100_bases
TAGTTCGGATTTTACTTAACCGGGTAAATTCGCCCGGTTTTCGCATGGAGATAATTATGAGAAACCTCTGTTTCTTACTG
ACGTTAGTGGCAACTCTGTT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: CDS103 [H]

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKFKRFNADDSSVKLGYRTTRSDWLTSHINENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGM
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Sequences:

>Translated_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKFKRFNADDSSVKLGYRTTRSDWLTSHINENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGM
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
>Mature_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKFKRFNADDSSVKLGYRTTRSDWLTSHINENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGM
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKN
VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1369 [H]

Homologues:

Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=98.8607594936709, Blast_Score=1623, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 89183; Mature: 89183

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKFKRFNADDSS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEHEECCCCCCC
VKLGYRTTRSDWLTSHINENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCHHHHCCCCCCCCEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGMAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC
>Mature Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKFKRFNADDSS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEHEECCCCCCC
VKLGYRTTRSDWLTSHINENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCHHHHCCCCCCCCEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGMAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQD
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]