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The map label for this gene is lomR [H]

Identifier: 209396697

GI number: 209396697

Start: 3246964

End: 3247698

Strand: Reverse

Name: lomR [H]

Synonym: ECH74115_3500

Alternate gene names: 209396697

Gene position: 3247698-3246964 (Counterclockwise)

Preceding gene: 209400699

Following gene: 209396132

Centisome position: 58.29

GC content: 45.85

Gene sequence:

>735_bases
ATGAAGAGTATAGCAACACTGGTTGTGTGTGCAATCTCCGGGATTGCCTGTGTAAATTTATCTGCACATGCAGCAGAAGG
AAACCATACAATTTCTCTGGGGTATGCGCACTTTCAGTTTCCGGGACTGAAGGATTTTGTAAAGGATGCGACTGCTCATA
ACAGGGAGACTTTCAGTCATTTCGTCAACAGAAACTACTTTTCTTCATTGGGCGAATATACAGATGGTCGGGTCAGTGGA
TATGAAGGCAAGGATAAAAATCCACAGGGCATTAATATCAGGTATCGCTACGAGATAACGGATGATTTTGGCGTTATCAC
CTCTTTTACATGGACGCGTTCTCTCACTAACTCACAGACATTTATTGATGTGCAGTCAGCCGATCATACCAGGAAGATTA
AGAATCCGGCAGCTTCTGCCAGAACGGATATCAGGGCGAATTACTGGAGTCTGTTAGCGGGGCCTTCATGGCGGGTTAAT
CAGTACATGAGCTTATATGCGATGGCAGGGATGGGCGTTGCTAAAGTTAGCGCTGACCTGAAAATTAAGGACAATATTAA
CAGTAGTGGCGGATTTTCTGAAAGCAACAGCACGAAAAAAAACTCCCTTGCGTGGGCTGCAGGTGCACAGTTTAACCTGA
ATGAGAGTGTTACACTGGATGTGGCTTACGAAGGTTCCGGCTCTGGCGACTGGCGCACGAGTGGAATTACTGCTGGCATT
GGCCTGAAATTCTAA

Upstream 100 bases:

>100_bases
ATATGATTAGTTGAAGCGAGTCTTTAATATTCATTTAAAATGTCTAAAAAGATGTATTATTAAAAAGTTTAGCGTGTTAT
CTGAATACAGGATATCTTAA

Downstream 100 bases:

>100_bases
CCTGTATCCGGTAACCGTTTACTACCCGCTGTGATGGCGGGTTTTTTATTGCCCGTACAGGGCAAAAACCGTAAATTATG
CGTGGGTGCCTTTCGGCTGA

Product: outer membrane protein Lom

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKSIATLVVCAISGIACVNLSAHAAEGNHTISLGYAHFQFPGLKDFVKDATAHNRETFSHFVNRNYFSSLGEYTDGRVSG
YEGKDKNPQGINIRYRYEITDDFGVITSFTWTRSLTNSQTFIDVQSADHTRKIKNPAASARTDIRANYWSLLAGPSWRVN
QYMSLYAMAGMGVAKVSADLKIKDNINSSGGFSESNSTKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGI
GLKF

Sequences:

>Translated_244_residues
MKSIATLVVCAISGIACVNLSAHAAEGNHTISLGYAHFQFPGLKDFVKDATAHNRETFSHFVNRNYFSSLGEYTDGRVSG
YEGKDKNPQGINIRYRYEITDDFGVITSFTWTRSLTNSQTFIDVQSADHTRKIKNPAASARTDIRANYWSLLAGPSWRVN
QYMSLYAMAGMGVAKVSADLKIKDNINSSGGFSESNSTKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGI
GLKF
>Mature_244_residues
MKSIATLVVCAISGIACVNLSAHAAEGNHTISLGYAHFQFPGLKDFVKDATAHNRETFSHFVNRNYFSSLGEYTDGRVSG
YEGKDKNPQGINIRYRYEITDDFGVITSFTWTRSLTNSQTFIDVQSADHTRKIKNPAASARTDIRANYWSLLAGPSWRVN
QYMSLYAMAGMGVAKVSADLKIKDNINSSGGFSESNSTKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGI
GLKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 26584; Mature: 26584

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIATLVVCAISGIACVNLSAHAAEGNHTISLGYAHFQFPGLKDFVKDATAHNRETFSH
CCHHHHHHHHHHCCEEEEECEEECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCHHHHHH
FVNRNYFSSLGEYTDGRVSGYEGKDKNPQGINIRYRYEITDDFGVITSFTWTRSLTNSQT
HHCCHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCE
FIDVQSADHTRKIKNPAASARTDIRANYWSLLAGPSWRVNQYMSLYAMAGMGVAKVSADL
EEEECCCCCHHHHCCCCHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCEEEEEECE
KIKDNINSSGGFSESNSTKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGI
EEECCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCEEEEEEEECCCCCCEEECCEEECC
GLKF
CCCC
>Mature Secondary Structure
MKSIATLVVCAISGIACVNLSAHAAEGNHTISLGYAHFQFPGLKDFVKDATAHNRETFSH
CCHHHHHHHHHHCCEEEEECEEECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCHHHHHH
FVNRNYFSSLGEYTDGRVSGYEGKDKNPQGINIRYRYEITDDFGVITSFTWTRSLTNSQT
HHCCHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCE
FIDVQSADHTRKIKNPAASARTDIRANYWSLLAGPSWRVNQYMSLYAMAGMGVAKVSADL
EEEECCCCCHHHHCCCCHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCEEEEEECE
KIKDNINSSGGFSESNSTKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGI
EEECCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCEEEEEEEECCCCCCEEECCEEECC
GLKF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]