Click here to switch to the map view.

The map label for this gene is ybgK [H]

Identifier: 209396411

GI number: 209396411

Start: 824161

End: 825093

Strand: Direct

Name: ybgK [H]

Synonym: ECH74115_0802

Alternate gene names: 209396411

Gene position: 824161-825093 (Clockwise)

Preceding gene: 209400269

Following gene: 209396404

Centisome position: 14.79

GC content: 55.73

Gene sequence:

>933_bases
ATGCTGAAGATTATTCGTGCGGGCATGTATACCACTGTGCAAGATGGCGGTCGTCACGGTTTTCGCCAGTCGGGTATCAG
CCACTGCGGCGCACTGGATATGCCTGCGTTACGCATTGCTAACCTGCTGGTGGGTAATGATGCCAATGCCCCCGCGCTGG
AGATCACGCTCGGTCAGTTAACGGTTGAGTTCGAAACTGATGGGTGGTTTGCTCTGACGGGTGCCGGTTGCGAAGCGCGG
CTGGATGATAATGCCGTCTGGACCGGCTGGCGATTGCCGATGAAAGCAGGCCAGCGTTTAACGCTTAAACGCCCGCAGCA
CGGGATGCGCAGTTATCTGGCGGTCGCGGGTGGTATTGATGTTCCGCCGGTAATGGGGTCATGCAGCACCGATCTCAAAG
TGGGGATTGGCGGGCTGGAAGGCCGTTTACTGAAGGATGGTGACCGACTCCCGATTGGCAAAGCGAAGCGTGATTTTATG
GAAGCGCAGGGCGTTAAACAGCTGCTGTGGGGCAACCGCATTCGCGCCTTGCCGGGGCCGGAATATCATGAGTTCGATCG
CGCCTCGCAGGATGCATTCTGGCGTTCGCCCTGGCAGCTTAGCTCGCAAAGTAACCGCATGGGCTATCGCTTACAGGGGC
AAATTTTAAAACGCACCACCGATCGCGAACTGTTATCTCACGGTTTGTTACCGGGCGTGGTGCAGGTGCCGCATAACGGG
CAGCCCATTGTGTTGATGAACGACGCACAGACCACCGGTGGTTACCCGCGTATTGCCTGTATCATTGAGGCTGATATGTA
CCATCTGGCGCAAATTCCGCTCGGTCAGCCGATTCATTTTGTCCAGTGTTCACTGGAAGAGGCACTGAAATCGCGGCAAG
ATCAGCAACGTTATTTCGAACAATTAGCGTGGCGGCTGCACAATGAAAATTGA

Upstream 100 bases:

>100_bases
TTGGTCATACCTCACTCAGCCTGTTTGATCCGGCGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGCTTT
GTACCGCAAAAGGAGGGAGT

Downstream 100 bases:

>100_bases
CCTGAACGCCGATCTGGGCGAAGGCTGCACCAGCGACGCAGAGCTATTAACGCTGGTTTCCTCTGCCAATATTGCCTGTG
GATTTCATGCAGGCGATGCG

Product: allophanate hydrolase, subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKSRQDQQRYFEQLAWRLHNEN

Sequences:

>Translated_310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKSRQDQQRYFEQLAWRLHNEN
>Mature_310_residues
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLTVEFETDGWFALTGAGCEAR
LDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFM
EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKSRQDQQRYFEQLAWRLHNEN

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=310, Percent_Identity=99.0322580645161, Blast_Score=635, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319685, Length=318, Percent_Identity=30.8176100628931, Blast_Score=123, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 34447; Mature: 34447

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
CCEEEECCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
EEEEECCCEEEEECCCCEEEECCCEEEEEEECCHHCCCEEEECCCHHHHHHHHHHHCCCC
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFMEAQGVKQLLWGNRIRALPGP
CCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCC
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
CHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCEEECCCCC
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKSRQDQQRYFE
CCEEEECCCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QLAWRLHNEN
HHHHHHCCCC
>Mature Secondary Structure
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
CCEEEECCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
EEEEECCCEEEEECCCCEEEECCCEEEEEEECCHHCCCEEEECCCHHHHHHHHHHHCCCC
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFMEAQGVKQLLWGNRIRALPGP
CCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCC
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
CHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCEEECCCCC
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKSRQDQQRYFE
CCEEEECCCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QLAWRLHNEN
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]